Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1898

Experiment: Tetracycline 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1897 and Shewana3_1898 are separated by 704 nucleotidesShewana3_1898 and Shewana3_1899 are separated by 44 nucleotidesShewana3_1899 and Shewana3_1900 are separated by 2 nucleotides Shewana3_1897: Shewana3_1897 - ATP-dependent helicase HrpA (RefSeq), at 2,250,421 to 2,254,302 _1897 Shewana3_1898: Shewana3_1898 - hypothetical protein (RefSeq), at 2,255,007 to 2,255,165 _1898 Shewana3_1899: Shewana3_1899 - NapD family protein (RefSeq), at 2,255,210 to 2,255,467 _1899 Shewana3_1900: Shewana3_1900 - nitrate reductase catalytic subunit (RefSeq), at 2,255,470 to 2,257,959 _1900 Position (kb) 2255 2256Strain fitness (log2 ratio) -1 0 1at 2254.040 kb on + strandat 2254.258 kb on - strandat 2254.594 kb on + strandat 2254.663 kb on - strandat 2254.901 kb on + strandat 2254.901 kb on + strandat 2254.964 kb on + strandat 2255.067 kb on - strand, within Shewana3_1898at 2255.081 kb on + strand, within Shewana3_1898at 2255.081 kb on + strand, within Shewana3_1898at 2255.315 kb on + strand, within Shewana3_1899at 2255.575 kb on - strandat 2255.575 kb on - strandat 2255.599 kb on + strandat 2255.607 kb on - strandat 2255.773 kb on - strand, within Shewana3_1900at 2256.011 kb on - strand, within Shewana3_1900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
remove
2,254,040 + -1.3
2,254,258 - +0.7
2,254,594 + +0.7
2,254,663 - +1.2
2,254,901 + +0.7
2,254,901 + +0.6
2,254,964 + +1.3
2,255,067 - Shewana3_1898 0.38 +0.7
2,255,081 + Shewana3_1898 0.47 +0.9
2,255,081 + Shewana3_1898 0.47 +1.4
2,255,315 + Shewana3_1899 0.41 +0.7
2,255,575 - +0.7
2,255,575 - +0.7
2,255,599 + -0.8
2,255,607 - +0.7
2,255,773 - Shewana3_1900 0.12 +0.7
2,256,011 - Shewana3_1900 0.22 -0.8

Or see this region's nucleotide sequence