Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1833

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1832 and Shewana3_1833 overlap by 13 nucleotidesShewana3_1833 and Shewana3_1834 are separated by 93 nucleotides Shewana3_1832: Shewana3_1832 - DNA-repair protein (RefSeq), at 2,173,136 to 2,174,392 _1832 Shewana3_1833: Shewana3_1833 - putative prophage repressor (RefSeq), at 2,174,380 to 2,175,204 _1833 Shewana3_1834: Shewana3_1834 - hypothetical protein (RefSeq), at 2,175,298 to 2,175,942 _1834 Position (kb) 2174 2175 2176Strain fitness (log2 ratio) -1 0 1 2at 2173.547 kb on + strand, within Shewana3_1832at 2173.640 kb on - strand, within Shewana3_1832at 2173.965 kb on + strand, within Shewana3_1832at 2174.402 kb on - strandat 2174.720 kb on + strand, within Shewana3_1833at 2174.735 kb on - strand, within Shewana3_1833at 2174.786 kb on + strand, within Shewana3_1833at 2175.004 kb on - strand, within Shewana3_1833at 2175.028 kb on - strand, within Shewana3_1833at 2175.028 kb on - strand, within Shewana3_1833at 2175.048 kb on - strand, within Shewana3_1833at 2175.518 kb on + strand, within Shewana3_1834at 2175.526 kb on - strand, within Shewana3_1834at 2175.526 kb on - strand, within Shewana3_1834at 2175.591 kb on + strand, within Shewana3_1834at 2175.591 kb on + strand, within Shewana3_1834at 2175.593 kb on + strand, within Shewana3_1834at 2175.635 kb on + strand, within Shewana3_1834at 2175.635 kb on + strand, within Shewana3_1834at 2175.841 kb on + strand, within Shewana3_1834at 2175.841 kb on + strand, within Shewana3_1834at 2175.900 kb on - strandat 2176.041 kb on + strandat 2176.049 kb on - strandat 2176.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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2,173,547 + Shewana3_1832 0.33 +0.7
2,173,640 - Shewana3_1832 0.40 +0.7
2,173,965 + Shewana3_1832 0.66 +0.7
2,174,402 - -0.8
2,174,720 + Shewana3_1833 0.41 +0.7
2,174,735 - Shewana3_1833 0.43 +0.7
2,174,786 + Shewana3_1833 0.49 +0.7
2,175,004 - Shewana3_1833 0.76 -1.3
2,175,028 - Shewana3_1833 0.79 -0.3
2,175,028 - Shewana3_1833 0.79 -0.6
2,175,048 - Shewana3_1833 0.81 -1.3
2,175,518 + Shewana3_1834 0.34 +0.7
2,175,526 - Shewana3_1834 0.35 +0.7
2,175,526 - Shewana3_1834 0.35 +0.7
2,175,591 + Shewana3_1834 0.45 +2.7
2,175,591 + Shewana3_1834 0.45 +0.7
2,175,593 + Shewana3_1834 0.46 -0.3
2,175,635 + Shewana3_1834 0.52 +0.3
2,175,635 + Shewana3_1834 0.52 -0.3
2,175,841 + Shewana3_1834 0.84 -1.6
2,175,841 + Shewana3_1834 0.84 +0.7
2,175,900 - +0.7
2,176,041 + +0.7
2,176,049 - +0.0
2,176,113 - +0.7

Or see this region's nucleotide sequence