Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1832 and Shewana3_1833 overlap by 13 nucleotides Shewana3_1833 and Shewana3_1834 are separated by 93 nucleotides
Shewana3_1832: Shewana3_1832 - DNA-repair protein (RefSeq), at 2,173,136 to 2,174,392
_1832
Shewana3_1833: Shewana3_1833 - putative prophage repressor (RefSeq), at 2,174,380 to 2,175,204
_1833
Shewana3_1834: Shewana3_1834 - hypothetical protein (RefSeq), at 2,175,298 to 2,175,942
_1834
Position (kb)
2174
2175
2176 Strain fitness (log2 ratio)
-1
0
1
2 at 2173.547 kb on + strand, within Shewana3_1832 at 2173.640 kb on - strand, within Shewana3_1832 at 2173.965 kb on + strand, within Shewana3_1832 at 2174.402 kb on - strand at 2174.720 kb on + strand, within Shewana3_1833 at 2174.735 kb on - strand, within Shewana3_1833 at 2174.786 kb on + strand, within Shewana3_1833 at 2175.004 kb on - strand, within Shewana3_1833 at 2175.028 kb on - strand, within Shewana3_1833 at 2175.028 kb on - strand, within Shewana3_1833 at 2175.048 kb on - strand, within Shewana3_1833 at 2175.518 kb on + strand, within Shewana3_1834 at 2175.526 kb on - strand, within Shewana3_1834 at 2175.526 kb on - strand, within Shewana3_1834 at 2175.591 kb on + strand, within Shewana3_1834 at 2175.591 kb on + strand, within Shewana3_1834 at 2175.593 kb on + strand, within Shewana3_1834 at 2175.635 kb on + strand, within Shewana3_1834 at 2175.635 kb on + strand, within Shewana3_1834 at 2175.841 kb on + strand, within Shewana3_1834 at 2175.841 kb on + strand, within Shewana3_1834 at 2175.900 kb on - strand at 2176.041 kb on + strand at 2176.049 kb on - strand at 2176.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 2,173,547 + Shewana3_1832 0.33 +0.7 2,173,640 - Shewana3_1832 0.40 +0.7 2,173,965 + Shewana3_1832 0.66 +0.7 2,174,402 - -0.8 2,174,720 + Shewana3_1833 0.41 +0.7 2,174,735 - Shewana3_1833 0.43 +0.7 2,174,786 + Shewana3_1833 0.49 +0.7 2,175,004 - Shewana3_1833 0.76 -1.3 2,175,028 - Shewana3_1833 0.79 -0.3 2,175,028 - Shewana3_1833 0.79 -0.6 2,175,048 - Shewana3_1833 0.81 -1.3 2,175,518 + Shewana3_1834 0.34 +0.7 2,175,526 - Shewana3_1834 0.35 +0.7 2,175,526 - Shewana3_1834 0.35 +0.7 2,175,591 + Shewana3_1834 0.45 +2.7 2,175,591 + Shewana3_1834 0.45 +0.7 2,175,593 + Shewana3_1834 0.46 -0.3 2,175,635 + Shewana3_1834 0.52 +0.3 2,175,635 + Shewana3_1834 0.52 -0.3 2,175,841 + Shewana3_1834 0.84 -1.6 2,175,841 + Shewana3_1834 0.84 +0.7 2,175,900 - +0.7 2,176,041 + +0.7 2,176,049 - +0.0 2,176,113 - +0.7
Or see this region's nucleotide sequence