Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1636 and Shewana3_1637 are separated by 9 nucleotides Shewana3_1637 and Shewana3_1638 are separated by 59 nucleotides
Shewana3_1636: Shewana3_1636 - SpoVR family protein (RefSeq), at 1,925,698 to 1,927,224
_1636
Shewana3_1637: Shewana3_1637 - hypothetical protein (RefSeq), at 1,927,234 to 1,928,508
_1637
Shewana3_1638: Shewana3_1638 - putative serine protein kinase, PrkA (RefSeq), at 1,928,568 to 1,930,502
_1638
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-1
0
1 at 1926.264 kb on - strand, within Shewana3_1636 at 1926.382 kb on - strand, within Shewana3_1636 at 1926.719 kb on + strand, within Shewana3_1636 at 1926.719 kb on + strand, within Shewana3_1636 at 1926.928 kb on - strand, within Shewana3_1636 at 1927.068 kb on + strand, within Shewana3_1636 at 1927.204 kb on - strand at 1927.490 kb on + strand, within Shewana3_1637 at 1927.630 kb on + strand, within Shewana3_1637 at 1927.758 kb on - strand, within Shewana3_1637 at 1927.853 kb on + strand, within Shewana3_1637 at 1928.147 kb on - strand, within Shewana3_1637 at 1928.287 kb on - strand, within Shewana3_1637 at 1928.319 kb on - strand, within Shewana3_1637 at 1928.778 kb on + strand, within Shewana3_1638 at 1929.165 kb on + strand, within Shewana3_1638 at 1929.320 kb on + strand, within Shewana3_1638 at 1929.328 kb on - strand, within Shewana3_1638 at 1929.335 kb on - strand, within Shewana3_1638 at 1929.358 kb on - strand, within Shewana3_1638 at 1929.441 kb on + strand, within Shewana3_1638
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,926,264 - Shewana3_1636 0.37 +0.8 1,926,382 - Shewana3_1636 0.45 -0.2 1,926,719 + Shewana3_1636 0.67 +0.8 1,926,719 + Shewana3_1636 0.67 +0.8 1,926,928 - Shewana3_1636 0.81 +0.8 1,927,068 + Shewana3_1636 0.90 -0.2 1,927,204 - -0.2 1,927,490 + Shewana3_1637 0.20 -0.2 1,927,630 + Shewana3_1637 0.31 -0.2 1,927,758 - Shewana3_1637 0.41 -0.8 1,927,853 + Shewana3_1637 0.49 +0.8 1,928,147 - Shewana3_1637 0.72 -0.8 1,928,287 - Shewana3_1637 0.83 -0.2 1,928,319 - Shewana3_1637 0.85 -0.2 1,928,778 + Shewana3_1638 0.11 +0.8 1,929,165 + Shewana3_1638 0.31 +0.8 1,929,320 + Shewana3_1638 0.39 +0.8 1,929,328 - Shewana3_1638 0.39 +0.8 1,929,335 - Shewana3_1638 0.40 -0.2 1,929,358 - Shewana3_1638 0.41 +0.8 1,929,441 + Shewana3_1638 0.45 +0.8
Or see this region's nucleotide sequence