Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1534 and Shewana3_1535 are separated by 7 nucleotides Shewana3_1535 and Shewana3_1536 are separated by 90 nucleotides Shewana3_1536 and Shewana3_1537 are separated by 144 nucleotides Shewana3_1537 and Shewana3_1538 are separated by 52 nucleotides
Shewana3_1534: Shewana3_1534 - hypothetical protein (RefSeq), at 1,788,543 to 1,791,095
_1534
Shewana3_1535: Shewana3_1535 - Type IV secretory pathway VirJ component-like protein (RefSeq), at 1,791,103 to 1,791,834
_1535
Shewana3_1536: Shewana3_1536 - hypothetical protein (RefSeq), at 1,791,925 to 1,792,992
_1536
Shewana3_1537: Shewana3_1537 - GDSL family lipase (RefSeq), at 1,793,137 to 1,793,736
_1537
Shewana3_1538: Shewana3_1538 - ABC transporter related (RefSeq), at 1,793,789 to 1,794,538
_1538
Position (kb)
1791
1792
1793 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1791.139 kb on - strand at 1791.191 kb on + strand, within Shewana3_1535 at 1791.550 kb on + strand, within Shewana3_1535 at 1791.558 kb on - strand, within Shewana3_1535 at 1791.743 kb on - strand, within Shewana3_1535 at 1791.851 kb on + strand at 1791.859 kb on - strand at 1791.859 kb on - strand at 1791.859 kb on - strand at 1791.907 kb on + strand at 1791.909 kb on + strand at 1791.931 kb on - strand at 1792.218 kb on - strand, within Shewana3_1536 at 1792.232 kb on - strand, within Shewana3_1536 at 1792.454 kb on - strand, within Shewana3_1536 at 1792.458 kb on + strand, within Shewana3_1536 at 1793.289 kb on - strand, within Shewana3_1537 at 1793.635 kb on + strand, within Shewana3_1537 at 1793.698 kb on - strand at 1793.931 kb on + strand, within Shewana3_1538 at 1793.964 kb on - strand, within Shewana3_1538
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,791,139 - +0.8 1,791,191 + Shewana3_1535 0.12 +1.8 1,791,550 + Shewana3_1535 0.61 +0.8 1,791,558 - Shewana3_1535 0.62 +0.8 1,791,743 - Shewana3_1535 0.87 +2.2 1,791,851 + -0.5 1,791,859 - +1.8 1,791,859 - +0.8 1,791,859 - +0.8 1,791,907 + +3.4 1,791,909 + -1.2 1,791,931 - +0.1 1,792,218 - Shewana3_1536 0.27 -2.5 1,792,232 - Shewana3_1536 0.29 +1.5 1,792,454 - Shewana3_1536 0.50 +0.8 1,792,458 + Shewana3_1536 0.50 +1.3 1,793,289 - Shewana3_1537 0.25 +0.8 1,793,635 + Shewana3_1537 0.83 -0.2 1,793,698 - +0.4 1,793,931 + Shewana3_1538 0.19 +0.3 1,793,964 - Shewana3_1538 0.23 -0.2
Or see this region's nucleotide sequence