Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1526 and Shewana3_1527 are separated by 151 nucleotides Shewana3_1527 and Shewana3_1528 are separated by 97 nucleotides Shewana3_1528 and Shewana3_1529 are separated by 261 nucleotides
Shewana3_1526: Shewana3_1526 - hypothetical protein (RefSeq), at 1,776,417 to 1,777,379
_1526
Shewana3_1527: Shewana3_1527 - transposase IS200-family protein (RefSeq), at 1,777,531 to 1,777,968
_1527
Shewana3_1528: Shewana3_1528 - short chain dehydrogenase (RefSeq), at 1,778,066 to 1,778,803
_1528
Shewana3_1529: Shewana3_1529 - hypothetical protein (RefSeq), at 1,779,065 to 1,781,551
_1529
Position (kb)
1778
1779 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1777.334 kb on + strand at 1777.342 kb on - strand at 1777.393 kb on - strand at 1777.558 kb on + strand at 1777.602 kb on - strand, within Shewana3_1527 at 1777.602 kb on - strand, within Shewana3_1527 at 1777.602 kb on - strand, within Shewana3_1527 at 1778.280 kb on - strand, within Shewana3_1528 at 1778.646 kb on - strand, within Shewana3_1528 at 1778.983 kb on - strand at 1779.130 kb on + strand at 1779.153 kb on + strand at 1779.386 kb on + strand, within Shewana3_1529 at 1779.493 kb on + strand, within Shewana3_1529 at 1779.745 kb on - strand, within Shewana3_1529
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,777,334 + +0.8 1,777,342 - +0.8 1,777,393 - +0.8 1,777,558 + +0.8 1,777,602 - Shewana3_1527 0.16 -0.4 1,777,602 - Shewana3_1527 0.16 +0.2 1,777,602 - Shewana3_1527 0.16 +0.4 1,778,280 - Shewana3_1528 0.29 -1.1 1,778,646 - Shewana3_1528 0.79 -0.9 1,778,983 - -1.3 1,779,130 + +1.4 1,779,153 + -0.7 1,779,386 + Shewana3_1529 0.13 -0.6 1,779,493 + Shewana3_1529 0.17 +3.9 1,779,745 - Shewana3_1529 0.27 +0.8
Or see this region's nucleotide sequence