Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1465 and Shewana3_1466 are separated by 169 nucleotides Shewana3_1466 and Shewana3_1467 are separated by 65 nucleotides Shewana3_1467 and Shewana3_1468 are separated by 80 nucleotides
Shewana3_1465: Shewana3_1465 - peptidase M16 domain-containing protein (RefSeq), at 1,702,658 to 1,705,447
_1465
Shewana3_1466: Shewana3_1466 - phosphohistidine phosphatase, SixA (RefSeq), at 1,705,617 to 1,706,087
_1466
Shewana3_1467: Shewana3_1467 - hypothetical protein (RefSeq), at 1,706,153 to 1,706,683
_1467
Shewana3_1468: Shewana3_1468 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq), at 1,706,764 to 1,707,708
_1468
Position (kb)
1705
1706
1707 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1704.654 kb on - strand, within Shewana3_1465 at 1704.743 kb on - strand, within Shewana3_1465 at 1704.762 kb on - strand, within Shewana3_1465 at 1704.854 kb on + strand, within Shewana3_1465 at 1704.885 kb on + strand, within Shewana3_1465 at 1704.893 kb on - strand, within Shewana3_1465 at 1704.893 kb on - strand, within Shewana3_1465 at 1704.979 kb on + strand, within Shewana3_1465 at 1705.057 kb on + strand, within Shewana3_1465 at 1705.158 kb on + strand, within Shewana3_1465 at 1705.432 kb on + strand at 1705.673 kb on + strand, within Shewana3_1466 at 1705.710 kb on + strand, within Shewana3_1466 at 1705.718 kb on - strand, within Shewana3_1466 at 1705.758 kb on + strand, within Shewana3_1466 at 1705.910 kb on + strand, within Shewana3_1466 at 1706.233 kb on - strand, within Shewana3_1467 at 1706.238 kb on + strand, within Shewana3_1467 at 1706.343 kb on - strand, within Shewana3_1467 at 1706.345 kb on + strand, within Shewana3_1467 at 1706.353 kb on - strand, within Shewana3_1467 at 1706.797 kb on + strand at 1706.807 kb on + strand at 1706.813 kb on - strand at 1706.815 kb on - strand at 1706.941 kb on + strand, within Shewana3_1468
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,704,654 - Shewana3_1465 0.72 -1.8 1,704,743 - Shewana3_1465 0.75 +1.4 1,704,762 - Shewana3_1465 0.75 +0.8 1,704,854 + Shewana3_1465 0.79 -0.2 1,704,885 + Shewana3_1465 0.80 +1.4 1,704,893 - Shewana3_1465 0.80 +2.0 1,704,893 - Shewana3_1465 0.80 -0.4 1,704,979 + Shewana3_1465 0.83 +0.3 1,705,057 + Shewana3_1465 0.86 +0.4 1,705,158 + Shewana3_1465 0.90 +0.8 1,705,432 + -1.2 1,705,673 + Shewana3_1466 0.12 +1.8 1,705,710 + Shewana3_1466 0.20 +1.7 1,705,718 - Shewana3_1466 0.21 +1.8 1,705,758 + Shewana3_1466 0.30 +2.0 1,705,910 + Shewana3_1466 0.62 +1.4 1,706,233 - Shewana3_1467 0.15 +0.5 1,706,238 + Shewana3_1467 0.16 +2.1 1,706,343 - Shewana3_1467 0.36 +0.8 1,706,345 + Shewana3_1467 0.36 +0.1 1,706,353 - Shewana3_1467 0.38 +0.6 1,706,797 + +0.2 1,706,807 + -0.0 1,706,813 - -0.8 1,706,815 - +0.8 1,706,941 + Shewana3_1468 0.19 -0.2
Or see this region's nucleotide sequence