Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1123 and Shewana3_1124 are separated by 80 nucleotides Shewana3_1124 and Shewana3_1125 are separated by 114 nucleotides
Shewana3_1123: Shewana3_1123 - peptidase M23B (RefSeq), at 1,321,357 to 1,322,253
_1123
Shewana3_1124: Shewana3_1124 - RNA polymerase, sigma 38 subunit, RpoS (RefSeq), at 1,322,334 to 1,323,314
_1124
Shewana3_1125: Shewana3_1125 - DNA mismatch repair protein MutS (RefSeq), at 1,323,429 to 1,326,014
_1125
Position (kb) 1322
1323
1324 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1321.345 kb on - strand at 1321.439 kb on - strand at 1321.544 kb on - strand, within Shewana3_1123 at 1321.878 kb on - strand, within Shewana3_1123 at 1321.922 kb on + strand, within Shewana3_1123 at 1322.101 kb on + strand, within Shewana3_1123 at 1322.243 kb on - strand at 1322.568 kb on + strand, within Shewana3_1124 at 1322.958 kb on - strand, within Shewana3_1124 at 1323.025 kb on - strand, within Shewana3_1124 at 1323.151 kb on + strand, within Shewana3_1124 at 1323.255 kb on - strand at 1323.581 kb on + strand at 1323.581 kb on + strand at 1323.688 kb on + strand, within Shewana3_1125 at 1323.688 kb on + strand, within Shewana3_1125 at 1323.696 kb on - strand, within Shewana3_1125 at 1323.711 kb on + strand, within Shewana3_1125 at 1323.831 kb on - strand, within Shewana3_1125 at 1323.831 kb on - strand, within Shewana3_1125 at 1323.885 kb on + strand, within Shewana3_1125 at 1323.933 kb on + strand, within Shewana3_1125 at 1323.940 kb on - strand, within Shewana3_1125 at 1324.082 kb on + strand, within Shewana3_1125
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,321,345 - +0.6 1,321,439 - -0.0 1,321,544 - Shewana3_1123 0.21 -0.6 1,321,878 - Shewana3_1123 0.58 -0.6 1,321,922 + Shewana3_1123 0.63 +1.0 1,322,101 + Shewana3_1123 0.83 +2.6 1,322,243 - +1.0 1,322,568 + Shewana3_1124 0.24 -1.3 1,322,958 - Shewana3_1124 0.64 +1.0 1,323,025 - Shewana3_1124 0.70 +0.6 1,323,151 + Shewana3_1124 0.83 +2.8 1,323,255 - -0.0 1,323,581 + +1.0 1,323,581 + +1.0 1,323,688 + Shewana3_1125 0.10 +2.0 1,323,688 + Shewana3_1125 0.10 +1.0 1,323,696 - Shewana3_1125 0.10 -0.0 1,323,711 + Shewana3_1125 0.11 -0.0 1,323,831 - Shewana3_1125 0.16 +0.5 1,323,831 - Shewana3_1125 0.16 +3.2 1,323,885 + Shewana3_1125 0.18 -2.4 1,323,933 + Shewana3_1125 0.19 +1.0 1,323,940 - Shewana3_1125 0.20 +1.0 1,324,082 + Shewana3_1125 0.25 +2.3
Or see this region's nucleotide sequence