Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1004 and Shewana3_1005 are separated by 42 nucleotides Shewana3_1005 and Shewana3_1006 are separated by 39 nucleotides Shewana3_1006 and Shewana3_1007 overlap by 11 nucleotides
Shewana3_1004: Shewana3_1004 - apolipoprotein N-acyltransferase (RefSeq), at 1,174,223 to 1,175,773
_1004
Shewana3_1005: Shewana3_1005 - CBS domain-containing protein (RefSeq), at 1,175,816 to 1,176,691
_1005
Shewana3_1006: Shewana3_1006 - putative metalloprotease (RefSeq), at 1,176,731 to 1,177,192
_1006
Shewana3_1007: Shewana3_1007 - PhoH family protein (RefSeq), at 1,177,182 to 1,178,246
_1007
Position (kb)
1175
1176
1177 Strain fitness (log2 ratio)
-2
-1
0
1 at 1175.864 kb on - strand at 1176.104 kb on - strand, within Shewana3_1005 at 1176.175 kb on - strand, within Shewana3_1005 at 1176.175 kb on - strand, within Shewana3_1005 at 1176.714 kb on - strand at 1176.714 kb on - strand at 1176.714 kb on - strand at 1177.321 kb on - strand, within Shewana3_1007 at 1177.321 kb on - strand, within Shewana3_1007 at 1177.321 kb on - strand, within Shewana3_1007 at 1177.672 kb on - strand, within Shewana3_1007
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,175,864 - -0.2 1,176,104 - Shewana3_1005 0.33 -1.7 1,176,175 - Shewana3_1005 0.41 -2.1 1,176,175 - Shewana3_1005 0.41 -2.2 1,176,714 - -2.5 1,176,714 - -1.1 1,176,714 - -0.5 1,177,321 - Shewana3_1007 0.13 +0.1 1,177,321 - Shewana3_1007 0.13 +0.1 1,177,321 - Shewana3_1007 0.13 -0.5 1,177,672 - Shewana3_1007 0.46 +1.1
Or see this region's nucleotide sequence