Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0953 and Shewana3_0954 are separated by 174 nucleotides Shewana3_0954 and proA are separated by 12 nucleotides
Shewana3_0953: Shewana3_0953 - xanthine/uracil/vitamin C permease (RefSeq), at 1,118,027 to 1,119,316
_0953
Shewana3_0954: Shewana3_0954 - gamma-glutamyl kinase (RefSeq), at 1,119,491 to 1,120,609
_0954
Shewana3_0955: proA - gamma-glutamyl phosphate reductase (RefSeq), at 1,120,622 to 1,121,899
proA
Position (kb)
1119
1120
1121 Strain fitness (log2 ratio)
-1
0
1 at 1118.906 kb on + strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1118.906 kb on + strand, within Shewana3_0953 at 1119.081 kb on - strand, within Shewana3_0953 at 1119.096 kb on + strand, within Shewana3_0953 at 1119.152 kb on - strand, within Shewana3_0953 at 1119.545 kb on + strand at 1119.594 kb on - strand at 1119.606 kb on + strand, within Shewana3_0954 at 1119.816 kb on + strand, within Shewana3_0954 at 1119.816 kb on + strand, within Shewana3_0954 at 1119.824 kb on - strand, within Shewana3_0954 at 1119.984 kb on - strand, within Shewana3_0954 at 1120.048 kb on + strand, within Shewana3_0954 at 1120.053 kb on + strand, within Shewana3_0954 at 1120.325 kb on + strand, within Shewana3_0954 at 1120.499 kb on + strand at 1120.580 kb on - strand at 1120.629 kb on + strand at 1120.655 kb on + strand at 1120.696 kb on - strand at 1120.924 kb on - strand, within proA at 1120.949 kb on + strand, within proA at 1120.957 kb on - strand, within proA at 1120.958 kb on - strand, within proA at 1121.122 kb on - strand, within proA at 1121.206 kb on + strand, within proA at 1121.206 kb on + strand, within proA at 1121.360 kb on + strand, within proA at 1121.391 kb on + strand, within proA at 1121.391 kb on + strand, within proA at 1121.399 kb on - strand, within proA at 1121.507 kb on + strand, within proA at 1121.512 kb on + strand, within proA at 1121.561 kb on + strand, within proA at 1121.588 kb on + strand, within proA
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,118,906 + Shewana3_0953 0.68 -0.7 1,118,906 + Shewana3_0953 0.68 -0.0 1,118,906 + Shewana3_0953 0.68 -0.6 1,118,906 + Shewana3_0953 0.68 +0.4 1,119,081 - Shewana3_0953 0.82 -1.1 1,119,096 + Shewana3_0953 0.83 +0.1 1,119,152 - Shewana3_0953 0.87 -0.7 1,119,545 + -0.3 1,119,594 - +0.1 1,119,606 + Shewana3_0954 0.10 -0.2 1,119,816 + Shewana3_0954 0.29 +0.0 1,119,816 + Shewana3_0954 0.29 -0.4 1,119,824 - Shewana3_0954 0.30 +0.6 1,119,984 - Shewana3_0954 0.44 -1.7 1,120,048 + Shewana3_0954 0.50 +0.2 1,120,053 + Shewana3_0954 0.50 -0.0 1,120,325 + Shewana3_0954 0.75 -0.2 1,120,499 + +0.0 1,120,580 - -0.9 1,120,629 + -0.2 1,120,655 + +0.2 1,120,696 - +0.9 1,120,924 - proA Shewana3_0955 0.24 -0.5 1,120,949 + proA Shewana3_0955 0.26 -0.8 1,120,957 - proA Shewana3_0955 0.26 +0.1 1,120,958 - proA Shewana3_0955 0.26 -0.3 1,121,122 - proA Shewana3_0955 0.39 +0.1 1,121,206 + proA Shewana3_0955 0.46 +0.2 1,121,206 + proA Shewana3_0955 0.46 +0.1 1,121,360 + proA Shewana3_0955 0.58 +0.6 1,121,391 + proA Shewana3_0955 0.60 -0.6 1,121,391 + proA Shewana3_0955 0.60 -0.2 1,121,399 - proA Shewana3_0955 0.61 -0.3 1,121,507 + proA Shewana3_0955 0.69 +0.7 1,121,512 + proA Shewana3_0955 0.70 +0.3 1,121,561 + proA Shewana3_0955 0.73 -0.7 1,121,588 + proA Shewana3_0955 0.76 -0.2
Or see this region's nucleotide sequence