Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0950 and Shewana3_0951 are separated by 218 nucleotides Shewana3_0951 and Shewana3_0952 are separated by 918 nucleotides
Shewana3_0950: Shewana3_0950 - M20C family Xaa-His dipeptidase (RefSeq), at 1,111,290 to 1,112,753
_0950
Shewana3_0951: Shewana3_0951 - dihydrofolate reductase (RefSeq), at 1,112,972 to 1,114,510
_0951
Shewana3_0952: Shewana3_0952 - TonB-dependent siderophore receptor (RefSeq), at 1,115,429 to 1,117,618
_0952
Position (kb)
1112
1113
1114
1115 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1112.097 kb on - strand, within Shewana3_0950 at 1112.184 kb on - strand, within Shewana3_0950 at 1112.251 kb on + strand, within Shewana3_0950 at 1112.259 kb on - strand, within Shewana3_0950 at 1112.299 kb on - strand, within Shewana3_0950 at 1112.393 kb on - strand, within Shewana3_0950 at 1112.393 kb on - strand, within Shewana3_0950 at 1112.518 kb on + strand, within Shewana3_0950 at 1112.736 kb on - strand at 1112.778 kb on - strand at 1112.843 kb on + strand at 1113.039 kb on + strand at 1113.143 kb on + strand, within Shewana3_0951 at 1113.303 kb on - strand, within Shewana3_0951 at 1113.381 kb on + strand, within Shewana3_0951 at 1113.389 kb on - strand, within Shewana3_0951 at 1113.389 kb on - strand, within Shewana3_0951 at 1113.389 kb on - strand, within Shewana3_0951 at 1113.733 kb on - strand, within Shewana3_0951 at 1114.035 kb on - strand, within Shewana3_0951 at 1114.078 kb on + strand, within Shewana3_0951 at 1114.111 kb on + strand, within Shewana3_0951 at 1114.879 kb on + strand at 1114.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,112,097 - Shewana3_0950 0.55 -0.1 1,112,184 - Shewana3_0950 0.61 -0.0 1,112,251 + Shewana3_0950 0.66 -1.2 1,112,259 - Shewana3_0950 0.66 -0.1 1,112,299 - Shewana3_0950 0.69 -0.4 1,112,393 - Shewana3_0950 0.75 -0.4 1,112,393 - Shewana3_0950 0.75 +0.0 1,112,518 + Shewana3_0950 0.84 -0.3 1,112,736 - +1.0 1,112,778 - +0.3 1,112,843 + +0.5 1,113,039 + -0.1 1,113,143 + Shewana3_0951 0.11 -0.4 1,113,303 - Shewana3_0951 0.22 +0.2 1,113,381 + Shewana3_0951 0.27 -0.2 1,113,389 - Shewana3_0951 0.27 +0.1 1,113,389 - Shewana3_0951 0.27 +4.0 1,113,389 - Shewana3_0951 0.27 +0.2 1,113,733 - Shewana3_0951 0.49 -0.2 1,114,035 - Shewana3_0951 0.69 -1.0 1,114,078 + Shewana3_0951 0.72 +0.3 1,114,111 + Shewana3_0951 0.74 -0.1 1,114,879 + -0.5 1,114,879 + -0.3
Or see this region's nucleotide sequence