Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0893 and Shewana3_0894 are separated by 237 nucleotides Shewana3_0894 and Shewana3_0895 are separated by 106 nucleotides
Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960
_0893
Shewana3_0894: Shewana3_0894 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 1,041,198 to 1,042,646
_0894
Shewana3_0895: Shewana3_0895 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,042,753 to 1,044,645
_0895
Position (kb)
1041
1042
1043 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1040.207 kb on + strand, within Shewana3_0893 at 1040.429 kb on - strand, within Shewana3_0893 at 1040.526 kb on + strand, within Shewana3_0893 at 1040.749 kb on - strand, within Shewana3_0893 at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on + strand at 1041.110 kb on - strand at 1041.118 kb on - strand at 1041.118 kb on - strand at 1041.118 kb on - strand at 1041.158 kb on + strand at 1041.178 kb on - strand at 1041.614 kb on + strand, within Shewana3_0894 at 1041.672 kb on + strand, within Shewana3_0894 at 1042.007 kb on + strand, within Shewana3_0894 at 1042.015 kb on - strand, within Shewana3_0894 at 1042.027 kb on - strand, within Shewana3_0894 at 1042.446 kb on - strand, within Shewana3_0894 at 1042.485 kb on - strand, within Shewana3_0894 at 1042.915 kb on - strand at 1043.504 kb on + strand, within Shewana3_0895 at 1043.542 kb on - strand, within Shewana3_0895
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 1,040,207 + Shewana3_0893 0.21 +1.0 1,040,429 - Shewana3_0893 0.44 -0.4 1,040,526 + Shewana3_0893 0.54 +0.1 1,040,749 - Shewana3_0893 0.78 +0.5 1,041,110 + +1.8 1,041,110 + +0.5 1,041,110 + -0.9 1,041,110 + +0.4 1,041,110 - +0.5 1,041,118 - +0.6 1,041,118 - +1.1 1,041,118 - -0.0 1,041,158 + +0.5 1,041,178 - +3.1 1,041,614 + Shewana3_0894 0.29 -0.3 1,041,672 + Shewana3_0894 0.33 -0.9 1,042,007 + Shewana3_0894 0.56 -0.6 1,042,015 - Shewana3_0894 0.56 -0.4 1,042,027 - Shewana3_0894 0.57 -0.1 1,042,446 - Shewana3_0894 0.86 +0.1 1,042,485 - Shewana3_0894 0.89 -0.1 1,042,915 - -0.3 1,043,504 + Shewana3_0895 0.40 +0.7 1,043,542 - Shewana3_0895 0.42 +0.9
Or see this region's nucleotide sequence