Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0879

Experiment: Tetracycline 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tetracycline 0.001 mg/ml
1,024,731	-		Shewana3_0878	0.50	-0.1
1,024,762	+		Shewana3_0878	0.52	+0.1
1,024,824	+		Shewana3_0878	0.55	+0.1
1,024,855	+		Shewana3_0878	0.57	+0.7
1,024,871	-		Shewana3_0878	0.58	+1.1
1,024,871	-		Shewana3_0878	0.58	+1.1
1,024,920	+		Shewana3_0878	0.61	+0.8
1,024,920	-		Shewana3_0878	0.61	+1.1
1,024,922	-		Shewana3_0878	0.61	+1.1
1,024,990	+		Shewana3_0878	0.66	-1.9
1,024,998	-		Shewana3_0878	0.66	+0.7
1,025,025	+		Shewana3_0878	0.68	+1.2
1,025,030	-		Shewana3_0878	0.68	+1.1
1,025,051	-		Shewana3_0878	0.69	-0.5
1,025,064	+		Shewana3_0878	0.70	-0.4
1,025,064	+		Shewana3_0878	0.70	+0.9
1,025,064	+		Shewana3_0878	0.70	-2.0
1,025,064	+		Shewana3_0878	0.70	+0.3
1,025,064	+		Shewana3_0878	0.70	+4.0
1,025,064	+		Shewana3_0878	0.70	+1.1
1,025,064	+		Shewana3_0878	0.70	+0.2
1,025,064	+		Shewana3_0878	0.70	+0.4
1,025,072	-		Shewana3_0878	0.71	+1.1
1,025,072	-		Shewana3_0878	0.71	+1.1
1,025,072	-		Shewana3_0878	0.71	+1.1
1,025,072	-		Shewana3_0878	0.71	+0.1
1,025,072	-		Shewana3_0878	0.71	+0.1
1,025,072	-		Shewana3_0878	0.71	+1.1
1,025,087	+		Shewana3_0878	0.72	+0.1
1,025,087	+		Shewana3_0878	0.72	+1.0
1,025,090	+		Shewana3_0878	0.72	-0.2
1,025,121	+		Shewana3_0878	0.74	+2.1
1,025,180	-		Shewana3_0878	0.77	+1.1
1,025,191	+		Shewana3_0878	0.78	+0.7
1,025,208	-		Shewana3_0878	0.79	+1.1
1,025,208	-		Shewana3_0878	0.79	+1.1
1,025,228	-		Shewana3_0878	0.80	+1.1
1,025,240	-		Shewana3_0878	0.81	-1.7
1,025,243	+		Shewana3_0878	0.81	-0.1
1,025,268	-		Shewana3_0878	0.83	-0.2
1,025,276	-		Shewana3_0878	0.83	+1.1
1,025,276	-		Shewana3_0878	0.83	+2.1
1,025,296	-		Shewana3_0878	0.84	+1.1
1,025,302	+		Shewana3_0878	0.85	+0.4
1,025,303	+		Shewana3_0878	0.85	-0.5
1,025,309	+		Shewana3_0878	0.85	-1.3
1,025,351	+		Shewana3_0878	0.88	+0.7
1,025,354	-				+1.1
1,025,354	-		Shewana3_0878	0.88	+1.1
1,025,356	+		Shewana3_0878	0.88	+0.2
1,025,359	-		Shewana3_0878	0.88	+1.1
1,025,364	-		Shewana3_0878	0.89	+1.1
1,025,364	-		Shewana3_0878	0.89	+1.1
1,025,364	-		Shewana3_0878	0.89	-0.2
1,025,366	+		Shewana3_0878	0.89	+0.1
1,025,374	+		Shewana3_0878	0.89	-0.4
1,025,382	-		Shewana3_0878	0.90	+0.1
1,025,387	-				-1.2
1,025,399	+				+0.3
1,025,407	-				+0.1
1,025,407	-				+1.1
1,025,407	-				+1.1
1,025,441	+				+0.2
1,025,469	+				+0.1
1,025,469	+				+0.4
1,025,481	+				-2.8
1,025,484	-				+1.1
1,025,489	-				+0.4
1,025,489	-				+1.1
1,025,499	-				+1.1
1,025,505	+				-0.4
1,025,505	+				+0.5
1,025,515	+				-0.4
1,025,523	-				+1.1
1,025,580	-				+2.1
1,025,599	+				-0.1
1,025,657	+				+0.1
1,025,657	+				+0.0
1,025,657	+				-0.3
1,025,662	+				+0.0
1,025,662	+				-0.3
1,025,662	+				+0.5
1,025,662	+				-0.4
1,025,665	-				-2.1
1,025,665	-				+1.7
1,025,665	-				-0.2
1,025,665	-				+1.1
1,025,665	-				+0.1
1,025,670	+				-0.7
1,025,670	-				+0.3
1,025,670	-				+0.1
1,025,670	-				+1.1
1,025,678	-				+1.7
1,025,698	+				+0.1
1,025,740	-				-0.5
1,025,771	-				+1.1
1,025,869	-		Shewana3_0879	0.23	+0.3
1,025,886	+		Shewana3_0879	0.26	+0.1
1,025,886	+		Shewana3_0879	0.26	-3.7
1,025,888	+		Shewana3_0879	0.26	-1.2
1,025,894	-				+1.1
1,025,894	-		Shewana3_0879	0.27	-1.7
1,025,905	+		Shewana3_0879	0.29	-0.2
1,025,905	+		Shewana3_0879	0.29	-0.0
1,025,905	+		Shewana3_0879	0.29	+0.2
1,025,955	-		Shewana3_0879	0.36	-1.0
1,025,974	-		Shewana3_0879	0.39	-0.3
1,026,046	-		Shewana3_0879	0.49	-1.2
1,026,046	-		Shewana3_0879	0.49	+1.1
1,026,074	-		Shewana3_0879	0.53	+1.1
1,026,077	-		Shewana3_0879	0.54	-0.2
1,026,103	+		Shewana3_0879	0.58	-0.2
1,026,161	+		Shewana3_0879	0.66	+0.2
1,026,169	-		Shewana3_0879	0.67	-0.5
1,026,206	+		Shewana3_0879	0.73	+0.1
1,026,325	-				+0.8
1,026,326	-				+0.5
1,026,384	-				+0.4
1,026,402	+				+0.0
1,026,402	+				+0.2
1,026,754	-				+0.1
1,026,829	+				+1.1
1,026,829	+				-0.5
1,026,873	+		Shewana3_0880	0.16	+0.5
1,026,905	-		Shewana3_0880	0.20	+0.4
1,026,922	+		Shewana3_0880	0.22	-0.4
1,027,104	-		Shewana3_0880	0.48	+0.1