Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0818 and Shewana3_0819 are separated by 434 nucleotides Shewana3_0819 and Shewana3_0820 are separated by 258 nucleotides
Shewana3_0818: Shewana3_0818 - hypothetical protein (RefSeq), at 946,687 to 947,175
_0818
Shewana3_0819: Shewana3_0819 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) <small>(from data)</small>, at 947,610 to 950,804
_0819
Shewana3_0820: Shewana3_0820 - SH3 type 3 domain-containing protein (RefSeq), at 951,063 to 951,611
_0820
Position (kb) 947
948
949
950
951 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 946.726 kb on - strand at 946.809 kb on - strand, within Shewana3_0818 at 946.877 kb on + strand, within Shewana3_0818 at 946.877 kb on - strand, within Shewana3_0818 at 946.959 kb on - strand, within Shewana3_0818 at 947.158 kb on - strand at 947.163 kb on + strand at 947.182 kb on - strand at 947.294 kb on - strand at 947.354 kb on + strand at 947.471 kb on + strand at 947.471 kb on + strand at 947.699 kb on + strand at 947.777 kb on - strand at 947.842 kb on - strand at 948.242 kb on - strand, within Shewana3_0819 at 948.253 kb on + strand, within Shewana3_0819 at 948.266 kb on - strand, within Shewana3_0819 at 948.266 kb on - strand, within Shewana3_0819 at 948.266 kb on - strand, within Shewana3_0819 at 948.281 kb on - strand, within Shewana3_0819 at 948.303 kb on + strand, within Shewana3_0819 at 948.327 kb on - strand, within Shewana3_0819 at 948.504 kb on - strand, within Shewana3_0819 at 948.612 kb on - strand, within Shewana3_0819 at 948.686 kb on - strand, within Shewana3_0819 at 948.783 kb on - strand, within Shewana3_0819 at 948.916 kb on - strand, within Shewana3_0819 at 948.969 kb on + strand, within Shewana3_0819 at 949.122 kb on + strand, within Shewana3_0819 at 949.274 kb on + strand, within Shewana3_0819 at 949.274 kb on + strand, within Shewana3_0819 at 949.293 kb on + strand, within Shewana3_0819 at 949.346 kb on - strand, within Shewana3_0819 at 949.443 kb on + strand, within Shewana3_0819 at 949.629 kb on + strand, within Shewana3_0819 at 949.793 kb on - strand, within Shewana3_0819 at 949.853 kb on + strand, within Shewana3_0819 at 949.972 kb on - strand, within Shewana3_0819 at 950.085 kb on + strand, within Shewana3_0819 at 950.094 kb on - strand, within Shewana3_0819 at 950.570 kb on + strand at 950.787 kb on - strand at 951.485 kb on - strand, within Shewana3_0820 at 951.526 kb on - strand, within Shewana3_0820 at 951.558 kb on + strand at 951.558 kb on + strand at 951.718 kb on - strand at 951.795 kb on + strand at 951.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 946,726 - +1.1 946,809 - Shewana3_0818 0.25 +1.1 946,877 + Shewana3_0818 0.39 +1.2 946,877 - Shewana3_0818 0.39 +0.7 946,959 - Shewana3_0818 0.56 +1.1 947,158 - +1.1 947,163 + -0.2 947,182 - +1.1 947,294 - -0.1 947,354 + -0.4 947,471 + +0.3 947,471 + -0.2 947,699 + +0.1 947,777 - +0.1 947,842 - +0.5 948,242 - Shewana3_0819 0.20 -0.7 948,253 + Shewana3_0819 0.20 +0.7 948,266 - Shewana3_0819 0.21 +0.0 948,266 - Shewana3_0819 0.21 +0.0 948,266 - Shewana3_0819 0.21 -0.1 948,281 - Shewana3_0819 0.21 +0.3 948,303 + Shewana3_0819 0.22 -0.7 948,327 - Shewana3_0819 0.22 -0.4 948,504 - Shewana3_0819 0.28 -0.4 948,612 - Shewana3_0819 0.31 +0.8 948,686 - Shewana3_0819 0.34 +0.7 948,783 - Shewana3_0819 0.37 -0.6 948,916 - Shewana3_0819 0.41 -0.2 948,969 + Shewana3_0819 0.43 -1.5 949,122 + Shewana3_0819 0.47 -0.0 949,274 + Shewana3_0819 0.52 -0.1 949,274 + Shewana3_0819 0.52 -0.1 949,293 + Shewana3_0819 0.53 -0.6 949,346 - Shewana3_0819 0.54 +0.4 949,443 + Shewana3_0819 0.57 -0.5 949,629 + Shewana3_0819 0.63 -0.3 949,793 - Shewana3_0819 0.68 -0.3 949,853 + Shewana3_0819 0.70 -0.1 949,972 - Shewana3_0819 0.74 +0.5 950,085 + Shewana3_0819 0.77 +0.4 950,094 - Shewana3_0819 0.78 +3.1 950,570 + +0.2 950,787 - +0.3 951,485 - Shewana3_0820 0.77 -0.3 951,526 - Shewana3_0820 0.84 -0.1 951,558 + -2.4 951,558 + -0.3 951,718 - -0.5 951,795 + -0.5 951,804 - +0.9
Or see this region's nucleotide sequence