Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0761 and Shewana3_0762 overlap by 4 nucleotides Shewana3_0762 and Shewana3_0763 overlap by 1 nucleotides Shewana3_0763 and Shewana3_0764 are separated by 400 nucleotides
Shewana3_0761: Shewana3_0761 - hypothetical protein (RefSeq), at 883,024 to 883,980
_0761
Shewana3_0762: Shewana3_0762 - hypothetical protein (RefSeq), at 883,977 to 884,555
_0762
Shewana3_0763: Shewana3_0763 - ECF subfamily RNA polymerase sigma-24 factor (RefSeq), at 884,555 to 885,088
_0763
Shewana3_0764: Shewana3_0764 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 885,489 to 887,351
_0764
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 883.973 kb on - strand at 884.234 kb on - strand, within Shewana3_0762 at 884.782 kb on - strand, within Shewana3_0763 at 884.830 kb on + strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.838 kb on - strand, within Shewana3_0763 at 884.868 kb on + strand, within Shewana3_0763 at 884.899 kb on + strand, within Shewana3_0763 at 884.964 kb on + strand, within Shewana3_0763 at 884.964 kb on + strand, within Shewana3_0763 at 884.972 kb on - strand, within Shewana3_0763 at 884.996 kb on - strand, within Shewana3_0763 at 885.046 kb on + strand at 885.100 kb on - strand at 885.109 kb on - strand at 885.156 kb on - strand at 885.167 kb on + strand at 885.343 kb on + strand at 885.489 kb on + strand at 885.517 kb on + strand at 885.517 kb on + strand at 885.601 kb on - strand at 885.690 kb on + strand, within Shewana3_0764 at 885.711 kb on - strand, within Shewana3_0764 at 885.802 kb on + strand, within Shewana3_0764 at 885.802 kb on + strand, within Shewana3_0764 at 885.802 kb on + strand, within Shewana3_0764 at 885.810 kb on - strand, within Shewana3_0764 at 885.810 kb on - strand, within Shewana3_0764 at 885.931 kb on + strand, within Shewana3_0764 at 885.993 kb on + strand, within Shewana3_0764 at 885.996 kb on - strand, within Shewana3_0764 at 886.059 kb on - strand, within Shewana3_0764 at 886.064 kb on - strand, within Shewana3_0764
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 883,973 - +0.9 884,234 - Shewana3_0762 0.44 +0.1 884,782 - Shewana3_0763 0.43 +0.1 884,830 + Shewana3_0763 0.51 +0.7 884,838 - Shewana3_0763 0.53 -0.3 884,838 - Shewana3_0763 0.53 +0.5 884,838 - Shewana3_0763 0.53 -1.0 884,868 + Shewana3_0763 0.59 -1.3 884,899 + Shewana3_0763 0.64 +0.0 884,964 + Shewana3_0763 0.77 +0.3 884,964 + Shewana3_0763 0.77 -0.3 884,972 - Shewana3_0763 0.78 +3.6 884,996 - Shewana3_0763 0.83 -0.3 885,046 + -0.5 885,100 - +0.1 885,109 - +0.3 885,156 - -0.4 885,167 + +0.4 885,343 + +0.0 885,489 + +0.1 885,517 + +0.1 885,517 + +0.5 885,601 - +2.1 885,690 + Shewana3_0764 0.11 -0.9 885,711 - Shewana3_0764 0.12 +1.1 885,802 + Shewana3_0764 0.17 +2.7 885,802 + Shewana3_0764 0.17 -1.2 885,802 + Shewana3_0764 0.17 +4.0 885,810 - Shewana3_0764 0.17 +1.1 885,810 - Shewana3_0764 0.17 -0.8 885,931 + Shewana3_0764 0.24 -1.9 885,993 + Shewana3_0764 0.27 -0.0 885,996 - Shewana3_0764 0.27 -1.4 886,059 - Shewana3_0764 0.31 +1.3 886,064 - Shewana3_0764 0.31 -0.9
Or see this region's nucleotide sequence