Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0758 and Shewana3_0759 are separated by 197 nucleotides Shewana3_0759 and Shewana3_0760 are separated by 337 nucleotides
Shewana3_0758: Shewana3_0758 - hypothetical protein (RefSeq), at 878,828 to 879,613
_0758
Shewana3_0759: Shewana3_0759 - peptidase M13 (RefSeq), at 879,811 to 881,895
_0759
Shewana3_0760: Shewana3_0760 - ribosomal small subunit pseudouridine synthase A (RefSeq), at 882,233 to 882,940
_0760
Position (kb)
879
880
881
882 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 878.881 kb on + strand at 878.910 kb on - strand, within Shewana3_0758 at 878.915 kb on + strand, within Shewana3_0758 at 878.928 kb on - strand, within Shewana3_0758 at 879.124 kb on + strand, within Shewana3_0758 at 879.191 kb on - strand, within Shewana3_0758 at 879.207 kb on - strand, within Shewana3_0758 at 879.281 kb on + strand, within Shewana3_0758 at 879.331 kb on + strand, within Shewana3_0758 at 879.414 kb on - strand, within Shewana3_0758 at 879.532 kb on - strand, within Shewana3_0758 at 879.642 kb on - strand at 879.878 kb on + strand at 879.886 kb on - strand at 879.886 kb on - strand at 879.886 kb on - strand at 879.934 kb on + strand at 879.942 kb on - strand at 880.132 kb on - strand, within Shewana3_0759 at 880.254 kb on - strand, within Shewana3_0759 at 880.417 kb on - strand, within Shewana3_0759 at 880.457 kb on + strand, within Shewana3_0759 at 880.463 kb on - strand, within Shewana3_0759 at 880.632 kb on + strand, within Shewana3_0759 at 880.670 kb on - strand, within Shewana3_0759 at 880.736 kb on + strand, within Shewana3_0759 at 880.870 kb on + strand, within Shewana3_0759 at 880.911 kb on - strand, within Shewana3_0759 at 880.916 kb on - strand, within Shewana3_0759 at 881.301 kb on + strand, within Shewana3_0759 at 881.372 kb on + strand, within Shewana3_0759 at 881.881 kb on - strand at 881.936 kb on - strand at 881.946 kb on - strand at 882.128 kb on + strand at 882.184 kb on + strand at 882.336 kb on - strand, within Shewana3_0760 at 882.373 kb on + strand, within Shewana3_0760 at 882.442 kb on + strand, within Shewana3_0760 at 882.502 kb on - strand, within Shewana3_0760 at 882.598 kb on - strand, within Shewana3_0760 at 882.824 kb on + strand, within Shewana3_0760 at 882.842 kb on + strand, within Shewana3_0760 at 882.884 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 878,881 + +0.8 878,910 - Shewana3_0758 0.10 +0.3 878,915 + Shewana3_0758 0.11 +0.3 878,928 - Shewana3_0758 0.13 -0.5 879,124 + Shewana3_0758 0.38 +0.1 879,191 - Shewana3_0758 0.46 -0.5 879,207 - Shewana3_0758 0.48 -0.2 879,281 + Shewana3_0758 0.58 -0.4 879,331 + Shewana3_0758 0.64 -0.7 879,414 - Shewana3_0758 0.75 +1.4 879,532 - Shewana3_0758 0.90 +0.7 879,642 - +0.2 879,878 + +0.4 879,886 - +0.0 879,886 - -0.7 879,886 - +0.1 879,934 + -0.4 879,942 - +0.1 880,132 - Shewana3_0759 0.15 +0.2 880,254 - Shewana3_0759 0.21 +0.3 880,417 - Shewana3_0759 0.29 +0.3 880,457 + Shewana3_0759 0.31 +1.1 880,463 - Shewana3_0759 0.31 -0.4 880,632 + Shewana3_0759 0.39 +0.1 880,670 - Shewana3_0759 0.41 +0.2 880,736 + Shewana3_0759 0.44 +1.7 880,870 + Shewana3_0759 0.51 +0.3 880,911 - Shewana3_0759 0.53 +3.2 880,916 - Shewana3_0759 0.53 +0.5 881,301 + Shewana3_0759 0.71 -0.8 881,372 + Shewana3_0759 0.75 +1.2 881,881 - +0.8 881,936 - +0.2 881,946 - +4.2 882,128 + -0.4 882,184 + +0.5 882,336 - Shewana3_0760 0.15 +0.1 882,373 + Shewana3_0760 0.20 +0.2 882,442 + Shewana3_0760 0.30 +0.4 882,502 - Shewana3_0760 0.38 -0.9 882,598 - Shewana3_0760 0.52 +2.1 882,824 + Shewana3_0760 0.83 +0.3 882,842 + Shewana3_0760 0.86 -0.1 882,884 + +0.1
Or see this region's nucleotide sequence