Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0718 and Shewana3_0719 are separated by 211 nucleotides Shewana3_0719 and Shewana3_0720 are separated by 145 nucleotides Shewana3_0720 and Shewana3_0721 are separated by 138 nucleotides
Shewana3_0718: Shewana3_0718 - tRNA-dihydrouridine synthase A (RefSeq), at 836,488 to 837,492
_0718
Shewana3_0719: Shewana3_0719 - hypothetical protein (RefSeq), at 837,704 to 837,997
_0719
Shewana3_0720: Shewana3_0720 - phage shock protein C, PspC (RefSeq), at 838,143 to 838,343
_0720
Shewana3_0721: Shewana3_0721 - enoyl-CoA hydratase (RefSeq), at 838,482 to 839,219
_0721
Position (kb)
837
838 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 836.770 kb on - strand, within Shewana3_0718 at 836.872 kb on - strand, within Shewana3_0718 at 836.889 kb on + strand, within Shewana3_0718 at 836.921 kb on + strand, within Shewana3_0718 at 836.929 kb on - strand, within Shewana3_0718 at 837.029 kb on + strand, within Shewana3_0718 at 837.077 kb on + strand, within Shewana3_0718 at 837.085 kb on - strand, within Shewana3_0718 at 837.148 kb on - strand, within Shewana3_0718 at 837.240 kb on + strand, within Shewana3_0718 at 837.307 kb on - strand, within Shewana3_0718 at 837.781 kb on + strand, within Shewana3_0719 at 837.781 kb on + strand, within Shewana3_0719 at 837.794 kb on + strand, within Shewana3_0719 at 837.864 kb on - strand, within Shewana3_0719 at 837.877 kb on + strand, within Shewana3_0719 at 837.877 kb on + strand, within Shewana3_0719 at 837.974 kb on + strand at 837.974 kb on + strand at 837.974 kb on + strand at 837.974 kb on + strand at 837.974 kb on + strand at 837.982 kb on - strand at 838.034 kb on - strand at 838.171 kb on + strand, within Shewana3_0720 at 838.179 kb on - strand, within Shewana3_0720 at 838.242 kb on + strand, within Shewana3_0720 at 838.250 kb on - strand, within Shewana3_0720 at 838.310 kb on - strand, within Shewana3_0720 at 838.435 kb on - strand at 838.467 kb on - strand at 838.477 kb on - strand at 838.563 kb on + strand, within Shewana3_0721 at 838.669 kb on - strand, within Shewana3_0721 at 838.794 kb on + strand, within Shewana3_0721 at 838.796 kb on - strand, within Shewana3_0721 at 838.802 kb on - strand, within Shewana3_0721 at 838.880 kb on - strand, within Shewana3_0721 at 838.890 kb on - strand, within Shewana3_0721 at 838.896 kb on - strand, within Shewana3_0721 at 838.900 kb on - strand, within Shewana3_0721 at 838.905 kb on - strand, within Shewana3_0721
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 836,770 - Shewana3_0718 0.28 -0.7 836,872 - Shewana3_0718 0.38 +1.6 836,889 + Shewana3_0718 0.40 -0.8 836,921 + Shewana3_0718 0.43 -0.9 836,929 - Shewana3_0718 0.44 -1.1 837,029 + Shewana3_0718 0.54 -0.5 837,077 + Shewana3_0718 0.59 -0.6 837,085 - Shewana3_0718 0.59 -0.4 837,148 - Shewana3_0718 0.66 -0.9 837,240 + Shewana3_0718 0.75 -0.3 837,307 - Shewana3_0718 0.81 +1.2 837,781 + Shewana3_0719 0.26 +0.7 837,781 + Shewana3_0719 0.26 +1.6 837,794 + Shewana3_0719 0.31 +0.3 837,864 - Shewana3_0719 0.54 -0.1 837,877 + Shewana3_0719 0.59 +0.2 837,877 + Shewana3_0719 0.59 +1.0 837,974 + +0.1 837,974 + +0.8 837,974 + +0.8 837,974 + -0.3 837,974 + +0.8 837,982 - -0.1 838,034 - -0.5 838,171 + Shewana3_0720 0.14 -1.9 838,179 - Shewana3_0720 0.18 +0.4 838,242 + Shewana3_0720 0.49 +0.9 838,250 - Shewana3_0720 0.53 +1.9 838,310 - Shewana3_0720 0.83 +1.2 838,435 - +1.2 838,467 - -0.0 838,477 - +0.1 838,563 + Shewana3_0721 0.11 +0.7 838,669 - Shewana3_0721 0.25 +0.3 838,794 + Shewana3_0721 0.42 +1.2 838,796 - Shewana3_0721 0.43 +0.2 838,802 - Shewana3_0721 0.43 +1.2 838,880 - Shewana3_0721 0.54 +0.7 838,890 - Shewana3_0721 0.55 -0.7 838,896 - Shewana3_0721 0.56 +0.4 838,900 - Shewana3_0721 0.57 +0.2 838,905 - Shewana3_0721 0.57 -0.2
Or see this region's nucleotide sequence