Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0684 and Shewana3_0685 are separated by 99 nucleotides Shewana3_0685 and Shewana3_0686 are separated by 80 nucleotides Shewana3_0686 and Shewana3_0687 overlap by 4 nucleotides
Shewana3_0684: Shewana3_0684 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (RefSeq), at 800,823 to 802,082
_0684
Shewana3_0685: Shewana3_0685 - TetR family transcriptional regulator (RefSeq), at 802,182 to 802,760
_0685
Shewana3_0686: Shewana3_0686 - hypothetical protein (RefSeq), at 802,841 to 803,701
_0686
Shewana3_0687: Shewana3_0687 - hypothetical protein (RefSeq), at 803,698 to 804,102
_0687
Position (kb) 802
803 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 802.234 kb on + strand at 802.235 kb on + strand at 802.260 kb on + strand, within Shewana3_0685 at 802.260 kb on + strand, within Shewana3_0685 at 802.268 kb on - strand, within Shewana3_0685 at 802.268 kb on - strand, within Shewana3_0685 at 802.268 kb on - strand, within Shewana3_0685 at 802.313 kb on - strand, within Shewana3_0685 at 802.416 kb on - strand, within Shewana3_0685 at 802.682 kb on + strand, within Shewana3_0685 at 802.921 kb on - strand at 803.013 kb on + strand, within Shewana3_0686 at 803.038 kb on + strand, within Shewana3_0686 at 803.249 kb on + strand, within Shewana3_0686 at 803.465 kb on + strand, within Shewana3_0686 at 803.472 kb on + strand, within Shewana3_0686 at 803.511 kb on - strand, within Shewana3_0686 at 803.553 kb on - strand, within Shewana3_0686 at 803.602 kb on + strand, within Shewana3_0686 at 803.639 kb on + strand at 803.655 kb on + strand at 803.705 kb on + strand at 803.727 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 802,234 + +1.2 802,235 + -0.3 802,260 + Shewana3_0685 0.13 +0.2 802,260 + Shewana3_0685 0.13 +0.2 802,268 - Shewana3_0685 0.15 +0.3 802,268 - Shewana3_0685 0.15 -0.2 802,268 - Shewana3_0685 0.15 +0.4 802,313 - Shewana3_0685 0.23 +0.4 802,416 - Shewana3_0685 0.40 +0.7 802,682 + Shewana3_0685 0.86 -0.4 802,921 - +0.4 803,013 + Shewana3_0686 0.20 +1.2 803,038 + Shewana3_0686 0.23 -1.1 803,249 + Shewana3_0686 0.47 -1.6 803,465 + Shewana3_0686 0.72 -1.7 803,472 + Shewana3_0686 0.73 +0.6 803,511 - Shewana3_0686 0.78 +1.2 803,553 - Shewana3_0686 0.83 -0.4 803,602 + Shewana3_0686 0.88 +0.8 803,639 + -0.1 803,655 + +1.2 803,705 + +2.8 803,727 + -1.8
Or see this region's nucleotide sequence