Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0668 and Shewana3_0669 overlap by 14 nucleotides Shewana3_0669 and Shewana3_0670 overlap by 4 nucleotides Shewana3_0670 and Shewana3_0671 are separated by 2 nucleotides Shewana3_0671 and Shewana3_0672 are separated by 28 nucleotides
Shewana3_0668: Shewana3_0668 - HPr family phosphocarrier protein (RefSeq), at 790,089 to 790,364
_0668
Shewana3_0669: Shewana3_0669 - hypothetical protein (RefSeq), at 790,351 to 791,205
_0669
Shewana3_0670: Shewana3_0670 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 791,202 to 791,645
_0670
Shewana3_0671: Shewana3_0671 - sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq), at 791,648 to 791,935
_0671
Shewana3_0672: Shewana3_0672 - RNA polymerase factor sigma-54 (RefSeq), at 791,964 to 793,439
_0672
Position (kb) 791
792 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 790.282 kb on - strand, within Shewana3_0668 at 790.883 kb on - strand, within Shewana3_0669 at 790.885 kb on - strand, within Shewana3_0669 at 790.968 kb on + strand, within Shewana3_0669 at 791.077 kb on - strand, within Shewana3_0669 at 791.128 kb on - strand at 791.131 kb on + strand at 791.509 kb on - strand, within Shewana3_0670 at 791.541 kb on + strand, within Shewana3_0670 at 791.541 kb on + strand, within Shewana3_0670 at 791.680 kb on - strand, within Shewana3_0671 at 791.719 kb on - strand, within Shewana3_0671 at 791.761 kb on - strand, within Shewana3_0671 at 791.818 kb on - strand, within Shewana3_0671 at 791.837 kb on - strand, within Shewana3_0671 at 791.837 kb on - strand, within Shewana3_0671 at 791.877 kb on + strand, within Shewana3_0671 at 791.877 kb on + strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.885 kb on - strand, within Shewana3_0671 at 791.923 kb on + strand at 791.981 kb on + strand at 792.007 kb on + strand at 792.145 kb on + strand, within Shewana3_0672 at 792.167 kb on - strand, within Shewana3_0672 at 792.169 kb on + strand, within Shewana3_0672 at 792.492 kb on - strand, within Shewana3_0672 at 792.543 kb on - strand, within Shewana3_0672
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 790,282 - Shewana3_0668 0.70 -0.3 790,883 - Shewana3_0669 0.62 +0.6 790,885 - Shewana3_0669 0.62 -0.7 790,968 + Shewana3_0669 0.72 +1.2 791,077 - Shewana3_0669 0.85 +0.1 791,128 - +1.0 791,131 + +1.2 791,509 - Shewana3_0670 0.69 +6.4 791,541 + Shewana3_0670 0.76 +2.6 791,541 + Shewana3_0670 0.76 +5.0 791,680 - Shewana3_0671 0.11 +3.1 791,719 - Shewana3_0671 0.25 +5.4 791,761 - Shewana3_0671 0.39 +2.8 791,818 - Shewana3_0671 0.59 +1.8 791,837 - Shewana3_0671 0.66 +5.7 791,837 - Shewana3_0671 0.66 +2.9 791,877 + Shewana3_0671 0.80 +0.5 791,877 + Shewana3_0671 0.80 -0.8 791,885 - Shewana3_0671 0.82 +0.7 791,885 - Shewana3_0671 0.82 +0.0 791,885 - Shewana3_0671 0.82 +1.4 791,923 + +0.5 791,981 + +2.5 792,007 + +2.9 792,145 + Shewana3_0672 0.12 +1.8 792,167 - Shewana3_0672 0.14 +2.6 792,169 + Shewana3_0672 0.14 +2.9 792,492 - Shewana3_0672 0.36 +2.2 792,543 - Shewana3_0672 0.39 +1.9
Or see this region's nucleotide sequence