Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0618 and Shewana3_0619 are separated by 120 nucleotides Shewana3_0619 and Shewana3_0620 are separated by 170 nucleotides
Shewana3_0618: Shewana3_0618 - Sel1 domain-containing protein (RefSeq), at 723,289 to 724,068
_0618
Shewana3_0619: Shewana3_0619 - 2'-5' RNA ligase (RefSeq), at 724,189 to 724,761
_0619
Shewana3_0620: Shewana3_0620 - diguanylate cyclase/phosphodiesterase (RefSeq), at 724,932 to 727,118
_0620
Position (kb) 724
725 Strain fitness (log2 ratio) -1
0
1
2
3 at 723.327 kb on - strand at 723.339 kb on + strand at 723.344 kb on + strand at 723.578 kb on + strand, within Shewana3_0618 at 723.641 kb on - strand, within Shewana3_0618 at 723.709 kb on + strand, within Shewana3_0618 at 724.180 kb on + strand at 724.266 kb on + strand, within Shewana3_0619 at 724.266 kb on + strand, within Shewana3_0619 at 724.291 kb on + strand, within Shewana3_0619 at 724.326 kb on + strand, within Shewana3_0619 at 724.334 kb on - strand, within Shewana3_0619 at 724.334 kb on - strand, within Shewana3_0619 at 724.441 kb on - strand, within Shewana3_0619 at 724.517 kb on - strand, within Shewana3_0619 at 724.724 kb on - strand at 724.738 kb on + strand at 725.041 kb on - strand at 725.088 kb on + strand at 725.089 kb on + strand at 725.091 kb on - strand at 725.203 kb on + strand, within Shewana3_0620 at 725.211 kb on - strand, within Shewana3_0620 at 725.211 kb on - strand, within Shewana3_0620 at 725.229 kb on + strand, within Shewana3_0620 at 725.249 kb on + strand, within Shewana3_0620 at 725.356 kb on + strand, within Shewana3_0620 at 725.433 kb on + strand, within Shewana3_0620 at 725.457 kb on + strand, within Shewana3_0620 at 725.502 kb on + strand, within Shewana3_0620 at 725.502 kb on + strand, within Shewana3_0620 at 725.510 kb on - strand, within Shewana3_0620 at 725.619 kb on + strand, within Shewana3_0620 at 725.678 kb on - strand, within Shewana3_0620 at 725.678 kb on - strand, within Shewana3_0620 at 725.693 kb on - strand, within Shewana3_0620
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 723,327 - -0.2 723,339 + -0.4 723,344 + -0.5 723,578 + Shewana3_0618 0.37 +0.1 723,641 - Shewana3_0618 0.45 +1.2 723,709 + Shewana3_0618 0.54 -0.8 724,180 + -0.3 724,266 + Shewana3_0619 0.13 +0.4 724,266 + Shewana3_0619 0.13 +0.1 724,291 + Shewana3_0619 0.18 +1.7 724,326 + Shewana3_0619 0.24 -0.3 724,334 - Shewana3_0619 0.25 -0.3 724,334 - Shewana3_0619 0.25 +0.1 724,441 - Shewana3_0619 0.44 +0.0 724,517 - Shewana3_0619 0.57 +3.4 724,724 - +0.1 724,738 + +0.1 725,041 - +0.8 725,088 + -1.1 725,089 + -0.6 725,091 - -0.4 725,203 + Shewana3_0620 0.12 +0.1 725,211 - Shewana3_0620 0.13 -0.3 725,211 - Shewana3_0620 0.13 -0.2 725,229 + Shewana3_0620 0.14 +0.0 725,249 + Shewana3_0620 0.14 +0.1 725,356 + Shewana3_0620 0.19 -0.1 725,433 + Shewana3_0620 0.23 -0.0 725,457 + Shewana3_0620 0.24 +0.2 725,502 + Shewana3_0620 0.26 +0.4 725,502 + Shewana3_0620 0.26 +0.5 725,510 - Shewana3_0620 0.26 -0.4 725,619 + Shewana3_0620 0.31 -0.0 725,678 - Shewana3_0620 0.34 -0.2 725,678 - Shewana3_0620 0.34 -0.1 725,693 - Shewana3_0620 0.35 +0.3
Or see this region's nucleotide sequence