Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0615 and Shewana3_0616 overlap by 20 nucleotides Shewana3_0616 and Shewana3_0617 are separated by 82 nucleotides Shewana3_0617 and Shewana3_0618 are separated by 422 nucleotides
Shewana3_0615: Shewana3_0615 - two component transcriptional regulator (RefSeq), at 721,146 to 721,820
_0615
Shewana3_0616: Shewana3_0616 - hypothetical protein (RefSeq), at 721,801 to 722,148
_0616
Shewana3_0617: Shewana3_0617 - cAMP-regulatory protein (RefSeq), at 722,231 to 722,866
_0617
Shewana3_0618: Shewana3_0618 - Sel1 domain-containing protein (RefSeq), at 723,289 to 724,068
_0618
Position (kb) 722
723 Strain fitness (log2 ratio) -1
0
1 at 721.231 kb on - strand, within Shewana3_0615 at 721.341 kb on - strand, within Shewana3_0615 at 721.436 kb on - strand, within Shewana3_0615 at 721.544 kb on + strand, within Shewana3_0615 at 721.559 kb on - strand, within Shewana3_0615 at 721.661 kb on + strand, within Shewana3_0615 at 721.683 kb on + strand, within Shewana3_0615 at 721.839 kb on + strand, within Shewana3_0616 at 721.852 kb on - strand, within Shewana3_0616 at 722.045 kb on + strand, within Shewana3_0616 at 722.231 kb on - strand at 722.711 kb on - strand, within Shewana3_0617 at 723.001 kb on - strand at 723.059 kb on + strand at 723.065 kb on + strand at 723.065 kb on + strand at 723.073 kb on + strand at 723.073 kb on + strand at 723.073 kb on + strand at 723.073 kb on - strand at 723.073 kb on - strand at 723.327 kb on - strand at 723.339 kb on + strand at 723.344 kb on + strand at 723.578 kb on + strand, within Shewana3_0618 at 723.641 kb on - strand, within Shewana3_0618 at 723.709 kb on + strand, within Shewana3_0618
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 721,231 - Shewana3_0615 0.13 -0.3 721,341 - Shewana3_0615 0.29 +0.1 721,436 - Shewana3_0615 0.43 +0.3 721,544 + Shewana3_0615 0.59 +0.2 721,559 - Shewana3_0615 0.61 -0.3 721,661 + Shewana3_0615 0.76 +1.2 721,683 + Shewana3_0615 0.80 -0.8 721,839 + Shewana3_0616 0.11 -1.6 721,852 - Shewana3_0616 0.15 +0.4 722,045 + Shewana3_0616 0.70 +0.2 722,231 - -0.2 722,711 - Shewana3_0617 0.75 -1.4 723,001 - +0.1 723,059 + +0.6 723,065 + -0.1 723,065 + +0.1 723,073 + -0.1 723,073 + -0.4 723,073 + +0.5 723,073 - +0.4 723,073 - -1.1 723,327 - -0.2 723,339 + -0.4 723,344 + -0.5 723,578 + Shewana3_0618 0.37 +0.1 723,641 - Shewana3_0618 0.45 +1.2 723,709 + Shewana3_0618 0.54 -0.8
Or see this region's nucleotide sequence