Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0573 and Shewana3_0574 are separated by 238 nucleotides Shewana3_0574 and Shewana3_0575 are separated by 402 nucleotides
Shewana3_0573: Shewana3_0573 - hypothetical protein (RefSeq), at 665,732 to 666,691
_0573
Shewana3_0574: Shewana3_0574 - ATP-dependent helicase HepA (RefSeq), at 666,930 to 669,836
_0574
Shewana3_0575: Shewana3_0575 - PhoH family protein (RefSeq), at 670,239 to 671,633
_0575
Position (kb) 666
667
668
669
670 Strain fitness (log2 ratio) -1
0
1
2
3 at 666.221 kb on + strand, within Shewana3_0573 at 666.229 kb on - strand, within Shewana3_0573 at 666.304 kb on + strand, within Shewana3_0573 at 666.312 kb on - strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.437 kb on + strand, within Shewana3_0573 at 666.581 kb on - strand, within Shewana3_0573 at 666.670 kb on - strand at 666.696 kb on - strand at 666.815 kb on - strand at 666.837 kb on - strand at 666.927 kb on + strand at 666.935 kb on - strand at 667.477 kb on - strand, within Shewana3_0574 at 667.478 kb on - strand, within Shewana3_0574 at 667.694 kb on + strand, within Shewana3_0574 at 667.711 kb on - strand, within Shewana3_0574 at 667.913 kb on - strand, within Shewana3_0574 at 667.913 kb on - strand, within Shewana3_0574 at 667.937 kb on - strand, within Shewana3_0574 at 668.104 kb on - strand, within Shewana3_0574 at 668.129 kb on - strand, within Shewana3_0574 at 668.378 kb on + strand, within Shewana3_0574 at 668.458 kb on - strand, within Shewana3_0574 at 668.460 kb on - strand, within Shewana3_0574 at 668.507 kb on + strand, within Shewana3_0574 at 668.712 kb on + strand, within Shewana3_0574 at 668.924 kb on + strand, within Shewana3_0574 at 668.972 kb on - strand, within Shewana3_0574 at 669.175 kb on - strand, within Shewana3_0574 at 669.257 kb on + strand, within Shewana3_0574 at 669.270 kb on + strand, within Shewana3_0574 at 669.374 kb on + strand, within Shewana3_0574 at 669.633 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.684 kb on + strand at 669.692 kb on - strand at 669.717 kb on + strand at 669.743 kb on - strand at 670.021 kb on + strand at 670.021 kb on + strand at 670.031 kb on + strand at 670.039 kb on - strand at 670.039 kb on - strand at 670.226 kb on + strand at 670.279 kb on - strand at 670.313 kb on - strand at 670.571 kb on + strand, within Shewana3_0575 at 670.636 kb on + strand, within Shewana3_0575
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 666,221 + Shewana3_0573 0.51 -0.2 666,229 - Shewana3_0573 0.52 +2.2 666,304 + Shewana3_0573 0.60 +0.5 666,312 - Shewana3_0573 0.60 +1.2 666,437 + Shewana3_0573 0.73 -0.4 666,437 + Shewana3_0573 0.73 -0.1 666,581 - Shewana3_0573 0.88 +0.6 666,670 - -1.4 666,696 - -0.6 666,815 - +2.5 666,837 - +0.8 666,927 + +2.2 666,935 - -0.1 667,477 - Shewana3_0574 0.19 +0.7 667,478 - Shewana3_0574 0.19 +0.3 667,694 + Shewana3_0574 0.26 +1.2 667,711 - Shewana3_0574 0.27 +0.6 667,913 - Shewana3_0574 0.34 +0.1 667,913 - Shewana3_0574 0.34 +0.5 667,937 - Shewana3_0574 0.35 +0.4 668,104 - Shewana3_0574 0.40 -0.1 668,129 - Shewana3_0574 0.41 +0.1 668,378 + Shewana3_0574 0.50 +0.9 668,458 - Shewana3_0574 0.53 +0.6 668,460 - Shewana3_0574 0.53 +0.5 668,507 + Shewana3_0574 0.54 +1.0 668,712 + Shewana3_0574 0.61 +0.8 668,924 + Shewana3_0574 0.69 -0.8 668,972 - Shewana3_0574 0.70 +1.1 669,175 - Shewana3_0574 0.77 +0.7 669,257 + Shewana3_0574 0.80 +0.0 669,270 + Shewana3_0574 0.80 +1.2 669,374 + Shewana3_0574 0.84 +2.1 669,633 + +2.8 669,684 + -0.8 669,684 + +1.0 669,684 + +0.2 669,692 - +0.6 669,717 + +1.2 669,743 - +0.6 670,021 + -0.2 670,021 + -0.1 670,031 + +0.1 670,039 - -0.3 670,039 - -0.3 670,226 + +0.1 670,279 - +0.2 670,313 - +0.1 670,571 + Shewana3_0575 0.24 -1.1 670,636 + Shewana3_0575 0.28 +0.1
Or see this region's nucleotide sequence