Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0523 and Shewana3_0524 are separated by 126 nucleotides Shewana3_0524 and Shewana3_0525 are separated by 43 nucleotides Shewana3_0525 and Shewana3_0526 are separated by 380 nucleotides
Shewana3_0523: Shewana3_0523 - EmrB/QacA family drug resistance transporter (RefSeq), at 613,958 to 615,565
_0523
Shewana3_0524: Shewana3_0524 - GCN5-related N-acetyltransferase (RefSeq), at 615,692 to 616,165
_0524
Shewana3_0525: Shewana3_0525 - antibiotic biosynthesis monooxygenase (RefSeq), at 616,209 to 616,535
_0525
Shewana3_0526: Shewana3_0526 - sigma-54 dependent trancsriptional regulator (RefSeq), at 616,916 to 618,280
_0526
Position (kb)
615
616
617 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 614.795 kb on - strand, within Shewana3_0523 at 614.865 kb on - strand, within Shewana3_0523 at 614.930 kb on + strand, within Shewana3_0523 at 615.099 kb on + strand, within Shewana3_0523 at 615.117 kb on + strand, within Shewana3_0523 at 615.125 kb on - strand, within Shewana3_0523 at 615.321 kb on + strand, within Shewana3_0523 at 615.327 kb on - strand, within Shewana3_0523 at 615.390 kb on - strand, within Shewana3_0523 at 615.403 kb on + strand, within Shewana3_0523 at 615.403 kb on + strand, within Shewana3_0523 at 615.411 kb on - strand at 615.439 kb on + strand at 615.573 kb on - strand at 615.590 kb on + strand at 615.639 kb on + strand at 615.746 kb on + strand, within Shewana3_0524 at 615.909 kb on - strand, within Shewana3_0524 at 615.936 kb on + strand, within Shewana3_0524 at 616.031 kb on - strand, within Shewana3_0524 at 616.092 kb on + strand, within Shewana3_0524 at 616.348 kb on + strand, within Shewana3_0525 at 616.369 kb on - strand, within Shewana3_0525 at 616.441 kb on + strand, within Shewana3_0525 at 616.449 kb on - strand, within Shewana3_0525 at 617.027 kb on + strand at 617.046 kb on - strand at 617.108 kb on - strand, within Shewana3_0526
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 614,795 - Shewana3_0523 0.52 +1.8 614,865 - Shewana3_0523 0.56 +1.2 614,930 + Shewana3_0523 0.60 +0.1 615,099 + Shewana3_0523 0.71 -0.4 615,117 + Shewana3_0523 0.72 -0.2 615,125 - Shewana3_0523 0.73 +1.2 615,321 + Shewana3_0523 0.85 -0.0 615,327 - Shewana3_0523 0.85 -0.1 615,390 - Shewana3_0523 0.89 -0.2 615,403 + Shewana3_0523 0.90 +0.2 615,403 + Shewana3_0523 0.90 -2.7 615,411 - -0.2 615,439 + -0.6 615,573 - -0.2 615,590 + +0.3 615,639 + -0.2 615,746 + Shewana3_0524 0.11 -0.1 615,909 - Shewana3_0524 0.46 -0.2 615,936 + Shewana3_0524 0.51 -0.2 616,031 - Shewana3_0524 0.72 +0.7 616,092 + Shewana3_0524 0.84 -0.5 616,348 + Shewana3_0525 0.43 -0.3 616,369 - Shewana3_0525 0.49 +0.1 616,441 + Shewana3_0525 0.71 +0.3 616,449 - Shewana3_0525 0.73 +0.0 617,027 + +1.0 617,046 - -0.4 617,108 - Shewana3_0526 0.14 -1.5
Or see this region's nucleotide sequence