Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0507 and Shewana3_0508 are separated by 91 nucleotides Shewana3_0508 and Shewana3_0509 are separated by 86 nucleotides Shewana3_0509 and Shewana3_0510 are separated by 27 nucleotides
Shewana3_0507: Shewana3_0507 - hypothetical protein (RefSeq), at 598,865 to 599,635
_0507
Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944
_0508
Shewana3_0509: Shewana3_0509 - short-chain dehydrogenase/reductase SDR (RefSeq), at 601,031 to 601,708
_0509
Shewana3_0510: Shewana3_0510 - biotin carboxyl carrier protein (RefSeq), at 601,736 to 602,191
_0510
Position (kb) 599
600
601 Strain fitness (log2 ratio) -1
0
1
2
3 at 598.768 kb on + strand at 598.816 kb on + strand at 599.000 kb on - strand, within Shewana3_0507 at 599.287 kb on - strand, within Shewana3_0507 at 599.290 kb on + strand, within Shewana3_0507 at 599.305 kb on - strand, within Shewana3_0507 at 599.387 kb on - strand, within Shewana3_0507 at 599.640 kb on + strand at 599.648 kb on - strand at 599.760 kb on + strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.806 kb on + strand at 599.814 kb on - strand at 599.814 kb on - strand at 599.916 kb on - strand, within Shewana3_0508 at 599.970 kb on - strand, within Shewana3_0508 at 600.148 kb on - strand, within Shewana3_0508 at 600.254 kb on - strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.457 kb on - strand, within Shewana3_0508 at 600.526 kb on + strand, within Shewana3_0508 at 600.534 kb on - strand, within Shewana3_0508 at 600.561 kb on - strand, within Shewana3_0508 at 600.595 kb on + strand, within Shewana3_0508 at 600.683 kb on + strand, within Shewana3_0508 at 600.686 kb on - strand, within Shewana3_0508 at 600.693 kb on + strand, within Shewana3_0508 at 600.731 kb on + strand, within Shewana3_0508 at 600.753 kb on - strand, within Shewana3_0508 at 600.759 kb on + strand, within Shewana3_0508 at 600.760 kb on + strand, within Shewana3_0508 at 600.768 kb on - strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.784 kb on + strand, within Shewana3_0508 at 600.787 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.792 kb on - strand, within Shewana3_0508 at 600.836 kb on + strand at 600.845 kb on - strand at 600.889 kb on + strand at 601.128 kb on + strand, within Shewana3_0509 at 601.193 kb on - strand, within Shewana3_0509 at 601.308 kb on + strand, within Shewana3_0509 at 601.338 kb on - strand, within Shewana3_0509 at 601.426 kb on + strand, within Shewana3_0509 at 601.469 kb on + strand, within Shewana3_0509 at 601.521 kb on + strand, within Shewana3_0509 at 601.686 kb on - strand at 601.878 kb on - strand, within Shewana3_0510 at 601.904 kb on + strand, within Shewana3_0510
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 598,768 + +0.1 598,816 + +0.4 599,000 - Shewana3_0507 0.18 +0.3 599,287 - Shewana3_0507 0.55 +2.5 599,290 + Shewana3_0507 0.55 +0.1 599,305 - Shewana3_0507 0.57 +0.2 599,387 - Shewana3_0507 0.68 +1.2 599,640 + -0.0 599,648 - -0.4 599,760 + -0.1 599,768 - -0.6 599,768 - +0.5 599,768 - -0.2 599,806 + -0.0 599,814 - +0.1 599,814 - +0.3 599,916 - Shewana3_0508 0.16 -0.1 599,970 - Shewana3_0508 0.20 +0.1 600,148 - Shewana3_0508 0.35 -0.1 600,254 - Shewana3_0508 0.43 -0.1 600,423 + Shewana3_0508 0.57 -0.5 600,423 + Shewana3_0508 0.57 -0.2 600,457 - Shewana3_0508 0.60 +0.1 600,526 + Shewana3_0508 0.66 +0.5 600,534 - Shewana3_0508 0.66 -0.4 600,561 - Shewana3_0508 0.68 +0.2 600,595 + Shewana3_0508 0.71 +3.3 600,683 + Shewana3_0508 0.78 -0.4 600,686 - Shewana3_0508 0.79 +0.3 600,693 + Shewana3_0508 0.79 +1.8 600,731 + Shewana3_0508 0.82 -0.4 600,753 - Shewana3_0508 0.84 +1.6 600,759 + Shewana3_0508 0.85 +0.0 600,760 + Shewana3_0508 0.85 +0.1 600,768 - Shewana3_0508 0.85 -0.4 600,784 + Shewana3_0508 0.87 +0.5 600,784 + Shewana3_0508 0.87 +0.0 600,787 - Shewana3_0508 0.87 +0.3 600,792 - Shewana3_0508 0.87 +0.2 600,792 - Shewana3_0508 0.87 +2.2 600,836 + -0.0 600,845 - +1.2 600,889 + +0.2 601,128 + Shewana3_0509 0.14 +0.0 601,193 - Shewana3_0509 0.24 -0.3 601,308 + Shewana3_0509 0.41 -0.2 601,338 - Shewana3_0509 0.45 -0.4 601,426 + Shewana3_0509 0.58 +0.2 601,469 + Shewana3_0509 0.65 +0.3 601,521 + Shewana3_0509 0.72 -0.1 601,686 - +0.3 601,878 - Shewana3_0510 0.31 +0.1 601,904 + Shewana3_0510 0.37 +0.5
Or see this region's nucleotide sequence