Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0506 and Shewana3_0507 are separated by 158 nucleotides Shewana3_0507 and Shewana3_0508 are separated by 91 nucleotides
Shewana3_0506: Shewana3_0506 - 3-octaprenyl-4hydroxybenzoate decarboxylase (RefSeq), at 597,225 to 598,706
_0506
Shewana3_0507: Shewana3_0507 - hypothetical protein (RefSeq), at 598,865 to 599,635
_0507
Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944
_0508
Position (kb) 598
599
600 Strain fitness (log2 ratio) -1
0
1
2
3 at 598.768 kb on + strand at 598.816 kb on + strand at 599.000 kb on - strand, within Shewana3_0507 at 599.287 kb on - strand, within Shewana3_0507 at 599.290 kb on + strand, within Shewana3_0507 at 599.305 kb on - strand, within Shewana3_0507 at 599.387 kb on - strand, within Shewana3_0507 at 599.640 kb on + strand at 599.648 kb on - strand at 599.760 kb on + strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.806 kb on + strand at 599.814 kb on - strand at 599.814 kb on - strand at 599.916 kb on - strand, within Shewana3_0508 at 599.970 kb on - strand, within Shewana3_0508 at 600.148 kb on - strand, within Shewana3_0508 at 600.254 kb on - strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.457 kb on - strand, within Shewana3_0508 at 600.526 kb on + strand, within Shewana3_0508 at 600.534 kb on - strand, within Shewana3_0508 at 600.561 kb on - strand, within Shewana3_0508 at 600.595 kb on + strand, within Shewana3_0508
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 598,768 + +0.1 598,816 + +0.4 599,000 - Shewana3_0507 0.18 +0.3 599,287 - Shewana3_0507 0.55 +2.5 599,290 + Shewana3_0507 0.55 +0.1 599,305 - Shewana3_0507 0.57 +0.2 599,387 - Shewana3_0507 0.68 +1.2 599,640 + -0.0 599,648 - -0.4 599,760 + -0.1 599,768 - -0.6 599,768 - +0.5 599,768 - -0.2 599,806 + -0.0 599,814 - +0.1 599,814 - +0.3 599,916 - Shewana3_0508 0.16 -0.1 599,970 - Shewana3_0508 0.20 +0.1 600,148 - Shewana3_0508 0.35 -0.1 600,254 - Shewana3_0508 0.43 -0.1 600,423 + Shewana3_0508 0.57 -0.5 600,423 + Shewana3_0508 0.57 -0.2 600,457 - Shewana3_0508 0.60 +0.1 600,526 + Shewana3_0508 0.66 +0.5 600,534 - Shewana3_0508 0.66 -0.4 600,561 - Shewana3_0508 0.68 +0.2 600,595 + Shewana3_0508 0.71 +3.3
Or see this region's nucleotide sequence