Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0499 and Shewana3_0500 are separated by 249 nucleotides Shewana3_0500 and Shewana3_0501 are separated by 41 nucleotides
Shewana3_0499: Shewana3_0499 - transcriptional regulator (RefSeq), at 581,895 to 583,178
_0499
Shewana3_0500: Shewana3_0500 - peptidase M13 (RefSeq), at 583,428 to 585,560
_0500
Shewana3_0501: Shewana3_0501 - fatty acid cistrans isomerase (RefSeq), at 585,602 to 587,995
_0501
Position (kb) 583
584
585
586 Strain fitness (log2 ratio) -2
-1
0
1 at 582.436 kb on + strand, within Shewana3_0499 at 582.452 kb on - strand, within Shewana3_0499 at 582.520 kb on - strand, within Shewana3_0499 at 582.883 kb on + strand, within Shewana3_0499 at 583.142 kb on - strand at 583.193 kb on - strand at 583.222 kb on - strand at 583.265 kb on + strand at 583.265 kb on + strand at 583.460 kb on + strand at 583.622 kb on + strand at 583.629 kb on - strand at 583.751 kb on - strand, within Shewana3_0500 at 583.769 kb on + strand, within Shewana3_0500 at 583.832 kb on + strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.840 kb on - strand, within Shewana3_0500 at 583.901 kb on - strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.936 kb on + strand, within Shewana3_0500 at 583.943 kb on + strand, within Shewana3_0500 at 584.045 kb on + strand, within Shewana3_0500 at 584.064 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500 at 584.065 kb on + strand, within Shewana3_0500 at 584.184 kb on - strand, within Shewana3_0500 at 584.250 kb on - strand, within Shewana3_0500 at 584.270 kb on + strand, within Shewana3_0500 at 584.270 kb on + strand, within Shewana3_0500 at 584.278 kb on - strand, within Shewana3_0500 at 584.280 kb on + strand, within Shewana3_0500 at 584.288 kb on - strand, within Shewana3_0500 at 584.389 kb on + strand, within Shewana3_0500 at 584.419 kb on + strand, within Shewana3_0500 at 584.492 kb on - strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.545 kb on + strand, within Shewana3_0500 at 584.553 kb on - strand, within Shewana3_0500 at 584.553 kb on - strand, within Shewana3_0500 at 584.553 kb on - strand, within Shewana3_0500 at 584.607 kb on + strand, within Shewana3_0500 at 584.665 kb on + strand, within Shewana3_0500 at 584.729 kb on + strand, within Shewana3_0500 at 584.737 kb on - strand, within Shewana3_0500 at 584.786 kb on - strand, within Shewana3_0500 at 584.916 kb on + strand, within Shewana3_0500 at 584.924 kb on + strand, within Shewana3_0500 at 585.173 kb on + strand, within Shewana3_0500 at 585.390 kb on + strand at 585.447 kb on + strand at 585.447 kb on + strand at 585.455 kb on - strand at 585.529 kb on - strand at 585.532 kb on - strand at 585.698 kb on - strand at 585.765 kb on + strand at 585.773 kb on - strand at 585.794 kb on + strand at 585.820 kb on - strand at 585.934 kb on - strand, within Shewana3_0501 at 586.017 kb on + strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.148 kb on - strand, within Shewana3_0501 at 586.163 kb on - strand, within Shewana3_0501 at 586.178 kb on - strand, within Shewana3_0501 at 586.227 kb on - strand, within Shewana3_0501 at 586.366 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501 at 586.528 kb on + strand, within Shewana3_0501
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 582,436 + Shewana3_0499 0.42 +0.6 582,452 - Shewana3_0499 0.43 +0.2 582,520 - Shewana3_0499 0.49 +0.1 582,883 + Shewana3_0499 0.77 +0.1 583,142 - +1.7 583,193 - -0.8 583,222 - +0.2 583,265 + -0.2 583,265 + -0.0 583,460 + +0.3 583,622 + -0.4 583,629 - +0.4 583,751 - Shewana3_0500 0.15 +0.5 583,769 + Shewana3_0500 0.16 +0.3 583,832 + Shewana3_0500 0.19 -0.6 583,840 - Shewana3_0500 0.19 -0.4 583,840 - Shewana3_0500 0.19 +0.4 583,901 - Shewana3_0500 0.22 -0.7 583,936 + Shewana3_0500 0.24 -0.2 583,936 + Shewana3_0500 0.24 -0.5 583,943 + Shewana3_0500 0.24 -0.6 584,045 + Shewana3_0500 0.29 -0.0 584,064 + Shewana3_0500 0.30 +0.5 584,065 + Shewana3_0500 0.30 -0.0 584,065 + Shewana3_0500 0.30 -0.0 584,184 - Shewana3_0500 0.35 +0.5 584,250 - Shewana3_0500 0.39 -0.5 584,270 + Shewana3_0500 0.39 -1.5 584,270 + Shewana3_0500 0.39 -0.4 584,278 - Shewana3_0500 0.40 +1.1 584,280 + Shewana3_0500 0.40 -0.4 584,288 - Shewana3_0500 0.40 -1.1 584,389 + Shewana3_0500 0.45 -0.2 584,419 + Shewana3_0500 0.46 -0.3 584,492 - Shewana3_0500 0.50 +0.1 584,545 + Shewana3_0500 0.52 +0.1 584,545 + Shewana3_0500 0.52 +0.0 584,545 + Shewana3_0500 0.52 +0.1 584,545 + Shewana3_0500 0.52 +0.0 584,553 - Shewana3_0500 0.53 -1.6 584,553 - Shewana3_0500 0.53 +0.0 584,553 - Shewana3_0500 0.53 -0.3 584,607 + Shewana3_0500 0.55 -0.0 584,665 + Shewana3_0500 0.58 +0.1 584,729 + Shewana3_0500 0.61 -0.1 584,737 - Shewana3_0500 0.61 +0.1 584,786 - Shewana3_0500 0.64 +0.3 584,916 + Shewana3_0500 0.70 -0.3 584,924 + Shewana3_0500 0.70 -2.1 585,173 + Shewana3_0500 0.82 -0.2 585,390 + -0.3 585,447 + +0.0 585,447 + -0.4 585,455 - +0.3 585,529 - +0.8 585,532 - -0.1 585,698 - -0.1 585,765 + -0.3 585,773 - +0.1 585,794 + -0.1 585,820 - +0.0 585,934 - Shewana3_0501 0.14 +0.2 586,017 + Shewana3_0501 0.17 +0.0 586,148 - Shewana3_0501 0.23 -0.2 586,148 - Shewana3_0501 0.23 -1.4 586,163 - Shewana3_0501 0.23 -1.7 586,178 - Shewana3_0501 0.24 +0.1 586,227 - Shewana3_0501 0.26 -0.2 586,366 + Shewana3_0501 0.32 -0.1 586,528 + Shewana3_0501 0.39 -0.8 586,528 + Shewana3_0501 0.39 +0.4
Or see this region's nucleotide sequence