Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0336 and Shewana3_0337 are separated by 8 nucleotides Shewana3_0337 and Shewana3_0338 overlap by 8 nucleotides Shewana3_0338 and Shewana3_0339 overlap by 4 nucleotides Shewana3_0339 and Shewana3_0340 are separated by 97 nucleotides Shewana3_0340 and Shewana3_0341 are separated by 29 nucleotides
Shewana3_0336: Shewana3_0336 - glycosyl transferase family protein (RefSeq), at 371,833 to 373,653
_0336
Shewana3_0337: Shewana3_0337 - thioester dehydrase family protein (RefSeq), at 373,662 to 374,036
_0337
Shewana3_0338: Shewana3_0338 - aconitate hydratase (RefSeq), at 374,029 to 375,393
_0338
Shewana3_0339: Shewana3_0339 - hypothetical protein (RefSeq), at 375,390 to 375,524
_0339
Shewana3_0340: Shewana3_0340 - transposase (RefSeq), at 375,622 to 376,017
_0340
Shewana3_0341: Shewana3_0341 - integrase catalytic subunit (RefSeq), at 376,047 to 376,850
_0341
Position (kb) 374
375
376 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 373.128 kb on - strand, within Shewana3_0336 at 373.142 kb on - strand, within Shewana3_0336 at 373.142 kb on - strand, within Shewana3_0336 at 373.245 kb on + strand, within Shewana3_0336 at 373.264 kb on - strand, within Shewana3_0336 at 373.422 kb on - strand, within Shewana3_0336 at 373.455 kb on - strand, within Shewana3_0336 at 373.470 kb on + strand, within Shewana3_0336 at 373.546 kb on + strand at 373.549 kb on - strand at 373.588 kb on - strand at 374.140 kb on - strand at 374.254 kb on - strand, within Shewana3_0338 at 374.302 kb on - strand, within Shewana3_0338 at 374.507 kb on - strand, within Shewana3_0338 at 374.508 kb on - strand, within Shewana3_0338 at 374.594 kb on + strand, within Shewana3_0338 at 374.602 kb on - strand, within Shewana3_0338 at 374.604 kb on + strand, within Shewana3_0338 at 374.612 kb on - strand, within Shewana3_0338 at 374.612 kb on - strand, within Shewana3_0338 at 374.660 kb on - strand, within Shewana3_0338 at 374.701 kb on - strand, within Shewana3_0338 at 374.715 kb on + strand, within Shewana3_0338 at 374.739 kb on + strand, within Shewana3_0338 at 374.751 kb on + strand, within Shewana3_0338 at 374.763 kb on + strand, within Shewana3_0338 at 374.763 kb on + strand, within Shewana3_0338 at 374.943 kb on + strand, within Shewana3_0338 at 374.943 kb on + strand, within Shewana3_0338 at 374.943 kb on + strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 374.951 kb on - strand, within Shewana3_0338 at 375.045 kb on + strand, within Shewana3_0338 at 375.066 kb on + strand, within Shewana3_0338 at 375.074 kb on - strand, within Shewana3_0338 at 375.179 kb on + strand, within Shewana3_0338 at 375.327 kb on + strand at 375.345 kb on - strand at 375.357 kb on + strand at 375.357 kb on + strand at 375.518 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 373,128 - Shewana3_0336 0.71 -0.5 373,142 - Shewana3_0336 0.72 -0.4 373,142 - Shewana3_0336 0.72 -0.1 373,245 + Shewana3_0336 0.78 +0.3 373,264 - Shewana3_0336 0.79 -0.4 373,422 - Shewana3_0336 0.87 -0.2 373,455 - Shewana3_0336 0.89 +0.7 373,470 + Shewana3_0336 0.90 +0.1 373,546 + -0.0 373,549 - -0.6 373,588 - -0.3 374,140 - -0.3 374,254 - Shewana3_0338 0.16 -0.0 374,302 - Shewana3_0338 0.20 -0.0 374,507 - Shewana3_0338 0.35 -0.5 374,508 - Shewana3_0338 0.35 -0.3 374,594 + Shewana3_0338 0.41 +3.4 374,602 - Shewana3_0338 0.42 +0.1 374,604 + Shewana3_0338 0.42 +0.2 374,612 - Shewana3_0338 0.43 -0.3 374,612 - Shewana3_0338 0.43 -0.9 374,660 - Shewana3_0338 0.46 -0.5 374,701 - Shewana3_0338 0.49 -0.4 374,715 + Shewana3_0338 0.50 +2.6 374,739 + Shewana3_0338 0.52 +0.0 374,751 + Shewana3_0338 0.53 +0.2 374,763 + Shewana3_0338 0.54 -0.1 374,763 + Shewana3_0338 0.54 -0.2 374,943 + Shewana3_0338 0.67 -0.3 374,943 + Shewana3_0338 0.67 +0.2 374,943 + Shewana3_0338 0.67 +0.1 374,951 - Shewana3_0338 0.68 -0.9 374,951 - Shewana3_0338 0.68 -0.1 374,951 - Shewana3_0338 0.68 -0.5 374,951 - Shewana3_0338 0.68 -0.0 375,045 + Shewana3_0338 0.74 +0.2 375,066 + Shewana3_0338 0.76 +4.6 375,074 - Shewana3_0338 0.77 -0.0 375,179 + Shewana3_0338 0.84 -0.1 375,327 + -0.3 375,345 - +0.4 375,357 + -0.6 375,357 + -0.5 375,518 - -1.6
Or see this region's nucleotide sequence