Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0326 and fabG are separated by 0 nucleotides fabG and Shewana3_0328 are separated by 125 nucleotides Shewana3_0328 and Shewana3_0329 are separated by 5 nucleotides
Shewana3_0326: Shewana3_0326 - 3-oxoacyl-(acyl carrier protein) synthase II (RefSeq), at 360,461 to 361,714
_0326
Shewana3_0327: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 361,715 to 362,440
fabG
Shewana3_0328: Shewana3_0328 - thioester dehydrase family protein (RefSeq), at 362,566 to 363,105
_0328
Shewana3_0329: Shewana3_0329 - 3-oxoacyl-(acyl carrier protein) synthase I (RefSeq), at 363,111 to 364,328
_0329
Position (kb) 361
362
363 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 360.763 kb on - strand, within Shewana3_0326 at 360.969 kb on - strand, within Shewana3_0326 at 361.180 kb on - strand, within Shewana3_0326 at 361.268 kb on + strand, within Shewana3_0326 at 361.286 kb on + strand, within Shewana3_0326 at 361.302 kb on - strand, within Shewana3_0326 at 361.362 kb on - strand, within Shewana3_0326 at 361.404 kb on - strand, within Shewana3_0326 at 361.612 kb on + strand at 361.612 kb on + strand at 361.612 kb on + strand at 361.612 kb on + strand at 361.620 kb on - strand at 361.620 kb on - strand at 361.620 kb on - strand at 361.620 kb on - strand at 361.654 kb on - strand at 361.691 kb on + strand at 361.699 kb on - strand at 361.838 kb on - strand, within fabG at 361.845 kb on + strand, within fabG at 361.845 kb on + strand, within fabG at 361.853 kb on - strand, within fabG at 361.930 kb on + strand, within fabG at 361.930 kb on + strand, within fabG at 361.930 kb on + strand, within fabG at 361.930 kb on + strand, within fabG at 361.938 kb on - strand, within fabG at 361.938 kb on - strand, within fabG at 361.938 kb on - strand, within fabG at 361.938 kb on - strand, within fabG at 361.957 kb on + strand, within fabG at 361.968 kb on + strand, within fabG at 361.993 kb on + strand, within fabG at 362.001 kb on - strand, within fabG at 362.001 kb on - strand, within fabG at 362.020 kb on - strand, within fabG at 362.191 kb on - strand, within fabG at 362.260 kb on + strand, within fabG at 362.302 kb on + strand, within fabG at 362.303 kb on - strand, within fabG at 362.310 kb on - strand, within fabG at 362.420 kb on + strand at 362.501 kb on + strand at 362.529 kb on + strand at 362.529 kb on + strand at 362.529 kb on + strand at 362.537 kb on - strand at 362.564 kb on + strand at 362.564 kb on + strand at 362.564 kb on + strand at 362.572 kb on - strand at 362.712 kb on - strand, within Shewana3_0328 at 362.764 kb on - strand, within Shewana3_0328 at 362.764 kb on - strand, within Shewana3_0328 at 362.773 kb on + strand, within Shewana3_0328 at 362.871 kb on - strand, within Shewana3_0328 at 363.171 kb on + strand at 363.298 kb on + strand, within Shewana3_0329
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 360,763 - Shewana3_0326 0.24 -0.1 360,969 - Shewana3_0326 0.41 -0.0 361,180 - Shewana3_0326 0.57 -0.9 361,268 + Shewana3_0326 0.64 +0.0 361,286 + Shewana3_0326 0.66 -0.4 361,302 - Shewana3_0326 0.67 -0.5 361,362 - Shewana3_0326 0.72 +0.1 361,404 - Shewana3_0326 0.75 -0.1 361,612 + -0.9 361,612 + +0.0 361,612 + -0.5 361,612 + +0.3 361,620 - -0.4 361,620 - -0.3 361,620 - -0.0 361,620 - +0.6 361,654 - -0.0 361,691 + -0.4 361,699 - -0.5 361,838 - fabG Shewana3_0327 0.17 -0.2 361,845 + fabG Shewana3_0327 0.18 +1.7 361,845 + fabG Shewana3_0327 0.18 -0.1 361,853 - fabG Shewana3_0327 0.19 -0.7 361,930 + fabG Shewana3_0327 0.30 -0.1 361,930 + fabG Shewana3_0327 0.30 -0.1 361,930 + fabG Shewana3_0327 0.30 +0.2 361,930 + fabG Shewana3_0327 0.30 +0.0 361,938 - fabG Shewana3_0327 0.31 -0.2 361,938 - fabG Shewana3_0327 0.31 -0.3 361,938 - fabG Shewana3_0327 0.31 -0.2 361,938 - fabG Shewana3_0327 0.31 -0.5 361,957 + fabG Shewana3_0327 0.33 +0.1 361,968 + fabG Shewana3_0327 0.35 +0.3 361,993 + fabG Shewana3_0327 0.38 -0.5 362,001 - fabG Shewana3_0327 0.39 -0.2 362,001 - fabG Shewana3_0327 0.39 -0.2 362,020 - fabG Shewana3_0327 0.42 -0.2 362,191 - fabG Shewana3_0327 0.66 +0.4 362,260 + fabG Shewana3_0327 0.75 -0.4 362,302 + fabG Shewana3_0327 0.81 -0.2 362,303 - fabG Shewana3_0327 0.81 +0.1 362,310 - fabG Shewana3_0327 0.82 -0.2 362,420 + +0.3 362,501 + -0.2 362,529 + -0.0 362,529 + +0.3 362,529 + +0.5 362,537 - -0.3 362,564 + +0.3 362,564 + +0.1 362,564 + +0.5 362,572 - -0.3 362,712 - Shewana3_0328 0.27 -0.2 362,764 - Shewana3_0328 0.37 -0.1 362,764 - Shewana3_0328 0.37 +0.5 362,773 + Shewana3_0328 0.38 +4.0 362,871 - Shewana3_0328 0.56 -0.1 363,171 + +0.9 363,298 + Shewana3_0329 0.15 -0.1
Or see this region's nucleotide sequence