Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0292

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0291 and Shewana3_0292 are separated by 105 nucleotidesShewana3_0292 and Shewana3_0293 are separated by 80 nucleotides Shewana3_0291: Shewana3_0291 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 323,374 to 324,492 _0291 Shewana3_0292: Shewana3_0292 - TetR family transcriptional regulator (RefSeq), at 324,598 to 325,209 _0292 Shewana3_0293: Shewana3_0293 - anaerobic C4-dicarboxylate transporter (RefSeq), at 325,290 to 326,633 _0293 Position (kb) 324 325 326Strain fitness (log2 ratio) -2 -1 0 1at 323.612 kb on + strand, within Shewana3_0291at 323.643 kb on - strand, within Shewana3_0291at 323.729 kb on - strand, within Shewana3_0291at 323.900 kb on + strand, within Shewana3_0291at 324.077 kb on - strand, within Shewana3_0291at 324.365 kb on - strand, within Shewana3_0291at 324.810 kb on + strand, within Shewana3_0292at 324.810 kb on + strand, within Shewana3_0292at 325.102 kb on - strand, within Shewana3_0292at 325.102 kb on - strand, within Shewana3_0292at 325.103 kb on - strand, within Shewana3_0292at 325.139 kb on + strand, within Shewana3_0292at 325.342 kb on - strandat 325.507 kb on + strand, within Shewana3_0293at 325.608 kb on + strand, within Shewana3_0293at 325.636 kb on - strand, within Shewana3_0293at 325.674 kb on + strand, within Shewana3_0293at 325.682 kb on - strand, within Shewana3_0293at 325.682 kb on - strand, within Shewana3_0293at 325.717 kb on + strand, within Shewana3_0293at 325.725 kb on - strand, within Shewana3_0293at 325.958 kb on + strand, within Shewana3_0293at 326.037 kb on - strand, within Shewana3_0293at 326.066 kb on - strand, within Shewana3_0293at 326.146 kb on - strand, within Shewana3_0293

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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323,612 + Shewana3_0291 0.21 -0.6
323,643 - Shewana3_0291 0.24 +0.7
323,729 - Shewana3_0291 0.32 -1.1
323,900 + Shewana3_0291 0.47 -0.2
324,077 - Shewana3_0291 0.63 -0.0
324,365 - Shewana3_0291 0.89 +0.2
324,810 + Shewana3_0292 0.35 -1.5
324,810 + Shewana3_0292 0.35 -1.7
325,102 - Shewana3_0292 0.82 -1.3
325,102 - Shewana3_0292 0.82 -2.5
325,103 - Shewana3_0292 0.83 -1.6
325,139 + Shewana3_0292 0.88 -1.2
325,342 - -0.2
325,507 + Shewana3_0293 0.16 -0.1
325,608 + Shewana3_0293 0.24 +0.4
325,636 - Shewana3_0293 0.26 -0.2
325,674 + Shewana3_0293 0.29 -0.3
325,682 - Shewana3_0293 0.29 +0.5
325,682 - Shewana3_0293 0.29 -0.0
325,717 + Shewana3_0293 0.32 +0.2
325,725 - Shewana3_0293 0.32 -0.3
325,958 + Shewana3_0293 0.50 -0.2
326,037 - Shewana3_0293 0.56 -0.3
326,066 - Shewana3_0293 0.58 +0.6
326,146 - Shewana3_0293 0.64 +1.0

Or see this region's nucleotide sequence