Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0292
Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Tetracycline 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
323,612 | + | Shewana3_0291 | 0.21 | -0.6 | |
323,643 | - | Shewana3_0291 | 0.24 | +0.7 | |
323,729 | - | Shewana3_0291 | 0.32 | -1.1 | |
323,900 | + | Shewana3_0291 | 0.47 | -0.2 | |
324,077 | - | Shewana3_0291 | 0.63 | -0.0 | |
324,365 | - | Shewana3_0291 | 0.89 | +0.2 | |
324,810 | + | Shewana3_0292 | 0.35 | -1.5 | |
324,810 | + | Shewana3_0292 | 0.35 | -1.7 | |
325,102 | - | Shewana3_0292 | 0.82 | -1.3 | |
325,102 | - | Shewana3_0292 | 0.82 | -2.5 | |
325,103 | - | Shewana3_0292 | 0.83 | -1.6 | |
325,139 | + | Shewana3_0292 | 0.88 | -1.2 | |
325,342 | - | -0.2 | |||
325,507 | + | Shewana3_0293 | 0.16 | -0.1 | |
325,608 | + | Shewana3_0293 | 0.24 | +0.4 | |
325,636 | - | Shewana3_0293 | 0.26 | -0.2 | |
325,674 | + | Shewana3_0293 | 0.29 | -0.3 | |
325,682 | - | Shewana3_0293 | 0.29 | +0.5 | |
325,682 | - | Shewana3_0293 | 0.29 | -0.0 | |
325,717 | + | Shewana3_0293 | 0.32 | +0.2 | |
325,725 | - | Shewana3_0293 | 0.32 | -0.3 | |
325,958 | + | Shewana3_0293 | 0.50 | -0.2 | |
326,037 | - | Shewana3_0293 | 0.56 | -0.3 | |
326,066 | - | Shewana3_0293 | 0.58 | +0.6 | |
326,146 | - | Shewana3_0293 | 0.64 | +1.0 |
Or see this region's nucleotide sequence