Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0162 and Shewana3_0163 are separated by 105 nucleotides Shewana3_0163 and Shewana3_0164 overlap by 23 nucleotides Shewana3_0164 and Shewana3_0165 overlap by 4 nucleotides
Shewana3_0162: Shewana3_0162 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 185,630 to 186,292
_0162
Shewana3_0163: Shewana3_0163 - aspartyl/asparaginyl beta-hydroxylase (RefSeq), at 186,398 to 187,012
_0163
Shewana3_0164: Shewana3_0164 - phytanoyl-CoA dioxygenase (RefSeq), at 186,990 to 189,002
_0164
Shewana3_0165: Shewana3_0165 - hypothetical protein (RefSeq), at 188,999 to 190,165
_0165
Position (kb) 186
187
188
189
190 Strain fitness (log2 ratio) -1
0
1
2 at 186.049 kb on - strand, within Shewana3_0162 at 186.122 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.171 kb on - strand, within Shewana3_0162 at 186.270 kb on - strand at 186.406 kb on + strand at 186.552 kb on - strand, within Shewana3_0163 at 186.563 kb on + strand, within Shewana3_0163 at 186.571 kb on - strand, within Shewana3_0163 at 186.578 kb on + strand, within Shewana3_0163 at 186.654 kb on + strand, within Shewana3_0163 at 186.764 kb on + strand, within Shewana3_0163 at 186.772 kb on - strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.777 kb on + strand, within Shewana3_0163 at 186.785 kb on - strand, within Shewana3_0163 at 186.847 kb on + strand, within Shewana3_0163 at 187.012 kb on + strand at 187.047 kb on - strand at 187.078 kb on + strand at 187.078 kb on + strand at 187.180 kb on + strand at 187.250 kb on - strand, within Shewana3_0164 at 187.294 kb on - strand, within Shewana3_0164 at 187.428 kb on + strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.436 kb on - strand, within Shewana3_0164 at 187.490 kb on + strand, within Shewana3_0164 at 187.527 kb on + strand, within Shewana3_0164 at 187.925 kb on - strand, within Shewana3_0164 at 188.148 kb on + strand, within Shewana3_0164 at 188.276 kb on + strand, within Shewana3_0164 at 188.276 kb on + strand, within Shewana3_0164 at 188.305 kb on - strand, within Shewana3_0164 at 188.310 kb on - strand, within Shewana3_0164 at 188.376 kb on + strand, within Shewana3_0164 at 188.378 kb on - strand, within Shewana3_0164 at 188.385 kb on - strand, within Shewana3_0164 at 188.385 kb on - strand, within Shewana3_0164 at 188.637 kb on - strand, within Shewana3_0164 at 188.839 kb on + strand at 188.859 kb on - strand at 188.949 kb on + strand at 189.138 kb on + strand, within Shewana3_0165 at 189.241 kb on + strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.347 kb on + strand, within Shewana3_0165 at 189.354 kb on - strand, within Shewana3_0165 at 189.366 kb on - strand, within Shewana3_0165 at 189.459 kb on + strand, within Shewana3_0165 at 189.469 kb on + strand, within Shewana3_0165 at 189.495 kb on + strand, within Shewana3_0165 at 189.517 kb on + strand, within Shewana3_0165 at 189.537 kb on - strand, within Shewana3_0165 at 189.577 kb on - strand, within Shewana3_0165 at 189.589 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.602 kb on - strand, within Shewana3_0165 at 189.678 kb on + strand, within Shewana3_0165 at 189.760 kb on + strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.770 kb on + strand, within Shewana3_0165 at 189.941 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.958 kb on - strand, within Shewana3_0165
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 186,049 - Shewana3_0162 0.63 +0.4 186,122 - Shewana3_0162 0.74 -0.1 186,171 - Shewana3_0162 0.82 +0.1 186,171 - Shewana3_0162 0.82 +0.2 186,270 - -0.3 186,406 + -0.8 186,552 - Shewana3_0163 0.25 +0.1 186,563 + Shewana3_0163 0.27 -0.2 186,571 - Shewana3_0163 0.28 -0.0 186,578 + Shewana3_0163 0.29 -0.1 186,654 + Shewana3_0163 0.42 +0.1 186,764 + Shewana3_0163 0.60 -0.2 186,772 - Shewana3_0163 0.61 -0.4 186,777 + Shewana3_0163 0.62 -0.7 186,777 + Shewana3_0163 0.62 +0.8 186,785 - Shewana3_0163 0.63 +0.0 186,847 + Shewana3_0163 0.73 -0.2 187,012 + +0.2 187,047 - +0.1 187,078 + -0.2 187,078 + -0.3 187,180 + -0.2 187,250 - Shewana3_0164 0.13 -0.0 187,294 - Shewana3_0164 0.15 +0.2 187,428 + Shewana3_0164 0.22 -0.9 187,436 - Shewana3_0164 0.22 +1.8 187,436 - Shewana3_0164 0.22 -0.0 187,490 + Shewana3_0164 0.25 -0.1 187,527 + Shewana3_0164 0.27 +0.1 187,925 - Shewana3_0164 0.46 -0.1 188,148 + Shewana3_0164 0.58 -0.4 188,276 + Shewana3_0164 0.64 +0.3 188,276 + Shewana3_0164 0.64 -0.1 188,305 - Shewana3_0164 0.65 -0.2 188,310 - Shewana3_0164 0.66 -1.4 188,376 + Shewana3_0164 0.69 +1.6 188,378 - Shewana3_0164 0.69 +0.2 188,385 - Shewana3_0164 0.69 +0.4 188,385 - Shewana3_0164 0.69 -0.0 188,637 - Shewana3_0164 0.82 -0.1 188,839 + -0.5 188,859 - -0.0 188,949 + +0.6 189,138 + Shewana3_0165 0.12 -0.2 189,241 + Shewana3_0165 0.21 +0.2 189,344 - Shewana3_0165 0.30 -0.0 189,344 - Shewana3_0165 0.30 +0.1 189,346 + Shewana3_0165 0.30 +0.1 189,346 + Shewana3_0165 0.30 +0.5 189,347 + Shewana3_0165 0.30 -0.2 189,354 - Shewana3_0165 0.30 -1.0 189,366 - Shewana3_0165 0.31 -0.8 189,459 + Shewana3_0165 0.39 -0.6 189,469 + Shewana3_0165 0.40 +0.4 189,495 + Shewana3_0165 0.43 -0.1 189,517 + Shewana3_0165 0.44 +0.0 189,537 - Shewana3_0165 0.46 +0.7 189,577 - Shewana3_0165 0.50 -0.1 189,589 + Shewana3_0165 0.51 -0.1 189,594 + Shewana3_0165 0.51 -0.6 189,594 + Shewana3_0165 0.51 +0.5 189,602 - Shewana3_0165 0.52 +0.6 189,678 + Shewana3_0165 0.58 -0.4 189,760 + Shewana3_0165 0.65 -0.2 189,768 - Shewana3_0165 0.66 +0.1 189,768 - Shewana3_0165 0.66 -0.0 189,770 + Shewana3_0165 0.66 +0.1 189,941 + Shewana3_0165 0.81 -0.2 189,950 + Shewana3_0165 0.81 -0.1 189,950 + Shewana3_0165 0.81 +0.1 189,958 - Shewana3_0165 0.82 +1.1
Or see this region's nucleotide sequence