Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0156 and Shewana3_0157 overlap by 20 nucleotides Shewana3_0157 and Shewana3_0158 overlap by 4 nucleotides Shewana3_0158 and Shewana3_0159 are separated by 48 nucleotides
Shewana3_0156: Shewana3_0156 - general secretion pathway protein I (RefSeq), at 180,965 to 181,333
_0156
Shewana3_0157: Shewana3_0157 - general secretion pathway protein J (RefSeq), at 181,314 to 182,081
_0157
Shewana3_0158: Shewana3_0158 - general secretion pathway protein K (RefSeq), at 182,078 to 183,076
_0158
Shewana3_0159: Shewana3_0159 - general secretion pathway protein L (RefSeq), at 183,125 to 184,312
_0159
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1 at 181.199 kb on + strand, within Shewana3_0156 at 181.303 kb on + strand at 181.353 kb on - strand at 181.423 kb on - strand, within Shewana3_0157 at 181.423 kb on - strand, within Shewana3_0157 at 181.423 kb on - strand, within Shewana3_0157 at 181.425 kb on + strand, within Shewana3_0157 at 181.425 kb on + strand, within Shewana3_0157 at 181.541 kb on + strand, within Shewana3_0157 at 181.558 kb on + strand, within Shewana3_0157 at 181.568 kb on + strand, within Shewana3_0157 at 181.576 kb on - strand, within Shewana3_0157 at 181.671 kb on - strand, within Shewana3_0157 at 181.855 kb on - strand, within Shewana3_0157 at 181.856 kb on - strand, within Shewana3_0157 at 181.979 kb on + strand, within Shewana3_0157 at 182.082 kb on - strand at 182.202 kb on + strand, within Shewana3_0158 at 182.208 kb on + strand, within Shewana3_0158 at 182.290 kb on - strand, within Shewana3_0158 at 182.300 kb on - strand, within Shewana3_0158 at 182.484 kb on - strand, within Shewana3_0158 at 182.752 kb on + strand, within Shewana3_0158 at 182.753 kb on - strand, within Shewana3_0158 at 182.869 kb on + strand, within Shewana3_0158 at 182.919 kb on - strand, within Shewana3_0158 at 183.175 kb on - strand at 183.224 kb on - strand at 183.594 kb on + strand, within Shewana3_0159 at 183.602 kb on - strand, within Shewana3_0159 at 183.611 kb on + strand, within Shewana3_0159 at 183.634 kb on + strand, within Shewana3_0159 at 183.634 kb on + strand, within Shewana3_0159 at 183.634 kb on + strand, within Shewana3_0159 at 183.642 kb on - strand, within Shewana3_0159 at 183.674 kb on + strand, within Shewana3_0159 at 183.802 kb on - strand, within Shewana3_0159 at 183.805 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.893 kb on + strand, within Shewana3_0159 at 183.901 kb on - strand, within Shewana3_0159 at 183.921 kb on - strand, within Shewana3_0159 at 183.964 kb on + strand, within Shewana3_0159 at 184.020 kb on - strand, within Shewana3_0159 at 184.049 kb on + strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159 at 184.057 kb on - strand, within Shewana3_0159
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 181,199 + Shewana3_0156 0.63 +0.1 181,303 + +0.1 181,353 - -1.3 181,423 - Shewana3_0157 0.14 -2.0 181,423 - Shewana3_0157 0.14 -2.4 181,423 - Shewana3_0157 0.14 -1.0 181,425 + Shewana3_0157 0.14 -0.9 181,425 + Shewana3_0157 0.14 -1.6 181,541 + Shewana3_0157 0.30 +0.9 181,558 + Shewana3_0157 0.32 -0.5 181,568 + Shewana3_0157 0.33 -0.1 181,576 - Shewana3_0157 0.34 -0.5 181,671 - Shewana3_0157 0.46 -2.2 181,855 - Shewana3_0157 0.70 -1.3 181,856 - Shewana3_0157 0.71 -1.2 181,979 + Shewana3_0157 0.87 -0.1 182,082 - -2.6 182,202 + Shewana3_0158 0.12 +0.1 182,208 + Shewana3_0158 0.13 -2.3 182,290 - Shewana3_0158 0.21 -0.6 182,300 - Shewana3_0158 0.22 -0.9 182,484 - Shewana3_0158 0.41 -1.3 182,752 + Shewana3_0158 0.67 -0.8 182,753 - Shewana3_0158 0.68 -0.2 182,869 + Shewana3_0158 0.79 -1.2 182,919 - Shewana3_0158 0.84 -1.8 183,175 - -2.1 183,224 - -0.7 183,594 + Shewana3_0159 0.39 -0.8 183,602 - Shewana3_0159 0.40 -1.2 183,611 + Shewana3_0159 0.41 -0.6 183,634 + Shewana3_0159 0.43 -0.6 183,634 + Shewana3_0159 0.43 -1.2 183,634 + Shewana3_0159 0.43 -1.1 183,642 - Shewana3_0159 0.44 -0.6 183,674 + Shewana3_0159 0.46 -1.3 183,802 - Shewana3_0159 0.57 -1.7 183,805 + Shewana3_0159 0.57 -0.8 183,893 + Shewana3_0159 0.65 -1.6 183,893 + Shewana3_0159 0.65 +0.7 183,893 + Shewana3_0159 0.65 -2.6 183,893 + Shewana3_0159 0.65 -1.5 183,901 - Shewana3_0159 0.65 -1.1 183,921 - Shewana3_0159 0.67 -0.5 183,964 + Shewana3_0159 0.71 -1.6 184,020 - Shewana3_0159 0.75 +0.5 184,049 + Shewana3_0159 0.78 -1.8 184,057 - Shewana3_0159 0.78 -0.7 184,057 - Shewana3_0159 0.78 -0.5
Or see this region's nucleotide sequence