Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4351

Experiment: Tetracycline 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4350 and Shewana3_4351 overlap by 4 nucleotidesShewana3_4351 and Shewana3_4352 are separated by 80 nucleotides Shewana3_4350: Shewana3_4350 - hypothetical protein (RefSeq), at 234,373 to 235,905 _4350 Shewana3_4351: Shewana3_4351 - patatin (RefSeq), at 235,902 to 236,840 _4351 Shewana3_4352: Shewana3_4352 - hypothetical protein (RefSeq), at 236,921 to 238,486 _4352 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2 3at 234.972 kb on + strand, within Shewana3_4350at 234.973 kb on - strand, within Shewana3_4350at 234.979 kb on - strand, within Shewana3_4350at 234.980 kb on - strand, within Shewana3_4350at 235.002 kb on + strand, within Shewana3_4350at 235.069 kb on + strand, within Shewana3_4350at 235.082 kb on + strand, within Shewana3_4350at 235.083 kb on - strand, within Shewana3_4350at 235.105 kb on + strand, within Shewana3_4350at 235.209 kb on - strand, within Shewana3_4350at 235.225 kb on - strand, within Shewana3_4350at 235.243 kb on - strand, within Shewana3_4350at 235.250 kb on + strand, within Shewana3_4350at 235.258 kb on - strand, within Shewana3_4350at 235.341 kb on + strand, within Shewana3_4350at 235.489 kb on + strand, within Shewana3_4350at 235.489 kb on - strand, within Shewana3_4350at 235.497 kb on - strand, within Shewana3_4350at 235.499 kb on - strand, within Shewana3_4350at 235.501 kb on + strand, within Shewana3_4350at 235.514 kb on + strand, within Shewana3_4350at 235.536 kb on - strand, within Shewana3_4350at 235.546 kb on - strand, within Shewana3_4350at 235.627 kb on + strand, within Shewana3_4350at 235.627 kb on + strand, within Shewana3_4350at 235.627 kb on + strand, within Shewana3_4350at 235.631 kb on + strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.635 kb on - strand, within Shewana3_4350at 235.663 kb on + strand, within Shewana3_4350at 235.663 kb on + strand, within Shewana3_4350at 235.743 kb on + strand, within Shewana3_4350at 235.743 kb on - strand, within Shewana3_4350at 235.744 kb on + strand, within Shewana3_4350at 235.752 kb on - strandat 235.752 kb on - strandat 235.752 kb on - strandat 236.133 kb on + strand, within Shewana3_4351at 236.134 kb on + strand, within Shewana3_4351at 236.161 kb on + strand, within Shewana3_4351at 236.176 kb on - strand, within Shewana3_4351at 236.176 kb on - strand, within Shewana3_4351at 236.198 kb on - strand, within Shewana3_4351at 236.268 kb on + strand, within Shewana3_4351at 236.382 kb on - strand, within Shewana3_4351at 236.469 kb on + strand, within Shewana3_4351at 236.495 kb on + strand, within Shewana3_4351at 236.554 kb on + strand, within Shewana3_4351at 236.788 kb on + strandat 236.788 kb on + strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.796 kb on - strandat 236.797 kb on - strandat 236.978 kb on - strandat 236.979 kb on - strandat 236.979 kb on - strandat 236.979 kb on - strandat 237.035 kb on + strandat 237.188 kb on - strand, within Shewana3_4352at 237.221 kb on + strand, within Shewana3_4352at 237.229 kb on - strand, within Shewana3_4352at 237.258 kb on - strand, within Shewana3_4352at 237.424 kb on + strandat 237.432 kb on - strand, within Shewana3_4352at 237.770 kb on + strand, within Shewana3_4352at 237.775 kb on + strand, within Shewana3_4352

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
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234,972 + Shewana3_4350 0.39 +0.8
234,973 - Shewana3_4350 0.39 +3.1
234,979 - Shewana3_4350 0.40 +0.8
234,980 - Shewana3_4350 0.40 +0.2
235,002 + Shewana3_4350 0.41 -1.2
235,069 + Shewana3_4350 0.45 -0.0
235,082 + Shewana3_4350 0.46 -0.2
235,083 - Shewana3_4350 0.46 -1.1
235,105 + Shewana3_4350 0.48 +0.8
235,209 - Shewana3_4350 0.55 +0.8
235,225 - Shewana3_4350 0.56 -0.2
235,243 - Shewana3_4350 0.57 +1.8
235,250 + Shewana3_4350 0.57 +1.4
235,258 - Shewana3_4350 0.58 +0.8
235,341 + Shewana3_4350 0.63 +0.8
235,489 + Shewana3_4350 0.73 -1.2
235,489 - Shewana3_4350 0.73 +0.8
235,497 - Shewana3_4350 0.73 +0.2
235,499 - Shewana3_4350 0.73 +1.0
235,501 + Shewana3_4350 0.74 -1.2
235,514 + Shewana3_4350 0.74 +0.0
235,536 - Shewana3_4350 0.76 +0.0
235,546 - Shewana3_4350 0.77 +0.8
235,627 + Shewana3_4350 0.82 +0.8
235,627 + Shewana3_4350 0.82 +0.8
235,627 + Shewana3_4350 0.82 +0.8
235,631 + Shewana3_4350 0.82 +0.1
235,635 - Shewana3_4350 0.82 +0.8
235,635 - Shewana3_4350 0.82 +0.2
235,635 - Shewana3_4350 0.82 -0.2
235,635 - Shewana3_4350 0.82 -0.4
235,663 + Shewana3_4350 0.84 +0.7
235,663 + Shewana3_4350 0.84 +0.8
235,743 + Shewana3_4350 0.89 -0.2
235,743 - Shewana3_4350 0.89 -0.8
235,744 + Shewana3_4350 0.89 +0.8
235,752 - +0.0
235,752 - -1.8
235,752 - +0.5
236,133 + Shewana3_4351 0.25 -1.2
236,134 + Shewana3_4351 0.25 +0.8
236,161 + Shewana3_4351 0.28 +0.8
236,176 - Shewana3_4351 0.29 +3.1
236,176 - Shewana3_4351 0.29 -0.2
236,198 - Shewana3_4351 0.32 -0.2
236,268 + Shewana3_4351 0.39 +0.8
236,382 - Shewana3_4351 0.51 -0.2
236,469 + Shewana3_4351 0.60 +0.8
236,495 + Shewana3_4351 0.63 +0.8
236,554 + Shewana3_4351 0.69 +1.0
236,788 + +0.8
236,788 + +0.8
236,796 - -0.1
236,796 - +0.4
236,796 - +0.2
236,796 - -0.3
236,796 - -0.6
236,797 - +0.3
236,978 - -0.9
236,979 - +0.6
236,979 - -1.1
236,979 - -0.1
237,035 + -0.0
237,188 - Shewana3_4352 0.17 +0.1
237,221 + Shewana3_4352 0.19 +0.8
237,229 - Shewana3_4352 0.20 +0.2
237,258 - Shewana3_4352 0.22 -0.5
237,424 + +0.8
237,432 - Shewana3_4352 0.33 -0.3
237,770 + Shewana3_4352 0.54 -0.6
237,775 + Shewana3_4352 0.55 -0.2

Or see this region's nucleotide sequence