Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4155

Experiment: Tetracycline 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4154 and Shewana3_4155 are separated by 74 nucleotidesShewana3_4155 and Shewana3_4156 overlap by 4 nucleotides Shewana3_4154: Shewana3_4154 - CzcA family heavy metal efflux protein (RefSeq), at 13,291 to 16,431 _4154 Shewana3_4155: Shewana3_4155 - RND family efflux transporter MFP subunit (RefSeq), at 16,506 to 17,447 _4155 Shewana3_4156: Shewana3_4156 - outer membrane efflux protein (RefSeq), at 17,444 to 18,784 _4156 Position (kb) 16 17 18Strain fitness (log2 ratio) -1 0 1 2at 15.541 kb on - strand, within Shewana3_4154at 15.556 kb on + strand, within Shewana3_4154at 15.556 kb on + strand, within Shewana3_4154at 15.568 kb on + strand, within Shewana3_4154at 15.568 kb on + strand, within Shewana3_4154at 15.568 kb on + strand, within Shewana3_4154at 15.845 kb on + strand, within Shewana3_4154at 15.940 kb on + strand, within Shewana3_4154at 15.948 kb on - strand, within Shewana3_4154at 15.948 kb on - strand, within Shewana3_4154at 16.288 kb on - strandat 16.335 kb on - strandat 16.369 kb on - strandat 16.391 kb on - strandat 16.427 kb on - strandat 16.453 kb on - strandat 16.569 kb on + strandat 16.602 kb on - strand, within Shewana3_4155at 16.921 kb on + strand, within Shewana3_4155at 16.951 kb on + strand, within Shewana3_4155at 17.106 kb on + strand, within Shewana3_4155at 17.120 kb on - strand, within Shewana3_4155at 17.294 kb on + strand, within Shewana3_4155at 17.302 kb on - strand, within Shewana3_4155at 17.387 kb on + strandat 17.493 kb on - strandat 17.513 kb on - strandat 17.534 kb on + strandat 17.772 kb on - strand, within Shewana3_4156at 17.941 kb on - strand, within Shewana3_4156at 18.104 kb on + strand, within Shewana3_4156at 18.109 kb on + strand, within Shewana3_4156at 18.321 kb on + strand, within Shewana3_4156at 18.408 kb on - strand, within Shewana3_4156at 18.423 kb on + strand, within Shewana3_4156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml
remove
15,541 - Shewana3_4154 0.72 -0.5
15,556 + Shewana3_4154 0.72 +0.4
15,556 + Shewana3_4154 0.72 +0.8
15,568 + Shewana3_4154 0.72 +0.3
15,568 + Shewana3_4154 0.72 +0.3
15,568 + Shewana3_4154 0.72 +0.8
15,845 + Shewana3_4154 0.81 +1.9
15,940 + Shewana3_4154 0.84 +0.4
15,948 - Shewana3_4154 0.85 +0.2
15,948 - Shewana3_4154 0.85 -0.7
16,288 - -0.2
16,335 - -0.6
16,369 - +0.1
16,391 - -0.2
16,427 - +0.4
16,453 - +0.1
16,569 + -0.4
16,602 - Shewana3_4155 0.10 -1.2
16,921 + Shewana3_4155 0.44 +1.8
16,951 + Shewana3_4155 0.47 -1.2
17,106 + Shewana3_4155 0.64 +0.7
17,120 - Shewana3_4155 0.65 -0.4
17,294 + Shewana3_4155 0.84 -1.5
17,302 - Shewana3_4155 0.85 +2.7
17,387 + +0.0
17,493 - +0.8
17,513 - +0.2
17,534 + -0.0
17,772 - Shewana3_4156 0.24 +1.5
17,941 - Shewana3_4156 0.37 +0.6
18,104 + Shewana3_4156 0.49 -0.0
18,109 + Shewana3_4156 0.50 +0.3
18,321 + Shewana3_4156 0.65 +0.1
18,408 - Shewana3_4156 0.72 +0.1
18,423 + Shewana3_4156 0.73 +1.0

Or see this region's nucleotide sequence