Experiment: Tetracycline 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4154 and Shewana3_4155 are separated by 74 nucleotides Shewana3_4155 and Shewana3_4156 overlap by 4 nucleotides
Shewana3_4154: Shewana3_4154 - CzcA family heavy metal efflux protein (RefSeq), at 13,291 to 16,431
_4154
Shewana3_4155: Shewana3_4155 - RND family efflux transporter MFP subunit (RefSeq), at 16,506 to 17,447
_4155
Shewana3_4156: Shewana3_4156 - outer membrane efflux protein (RefSeq), at 17,444 to 18,784
_4156
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-1
0
1
2 at 15.541 kb on - strand, within Shewana3_4154 at 15.556 kb on + strand, within Shewana3_4154 at 15.556 kb on + strand, within Shewana3_4154 at 15.568 kb on + strand, within Shewana3_4154 at 15.568 kb on + strand, within Shewana3_4154 at 15.568 kb on + strand, within Shewana3_4154 at 15.845 kb on + strand, within Shewana3_4154 at 15.940 kb on + strand, within Shewana3_4154 at 15.948 kb on - strand, within Shewana3_4154 at 15.948 kb on - strand, within Shewana3_4154 at 16.288 kb on - strand at 16.335 kb on - strand at 16.369 kb on - strand at 16.391 kb on - strand at 16.427 kb on - strand at 16.453 kb on - strand at 16.569 kb on + strand at 16.602 kb on - strand, within Shewana3_4155 at 16.921 kb on + strand, within Shewana3_4155 at 16.951 kb on + strand, within Shewana3_4155 at 17.106 kb on + strand, within Shewana3_4155 at 17.120 kb on - strand, within Shewana3_4155 at 17.294 kb on + strand, within Shewana3_4155 at 17.302 kb on - strand, within Shewana3_4155 at 17.387 kb on + strand at 17.493 kb on - strand at 17.513 kb on - strand at 17.534 kb on + strand at 17.772 kb on - strand, within Shewana3_4156 at 17.941 kb on - strand, within Shewana3_4156 at 18.104 kb on + strand, within Shewana3_4156 at 18.109 kb on + strand, within Shewana3_4156 at 18.321 kb on + strand, within Shewana3_4156 at 18.408 kb on - strand, within Shewana3_4156 at 18.423 kb on + strand, within Shewana3_4156
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.001 mg/ml remove 15,541 - Shewana3_4154 0.72 -0.5 15,556 + Shewana3_4154 0.72 +0.4 15,556 + Shewana3_4154 0.72 +0.8 15,568 + Shewana3_4154 0.72 +0.3 15,568 + Shewana3_4154 0.72 +0.3 15,568 + Shewana3_4154 0.72 +0.8 15,845 + Shewana3_4154 0.81 +1.9 15,940 + Shewana3_4154 0.84 +0.4 15,948 - Shewana3_4154 0.85 +0.2 15,948 - Shewana3_4154 0.85 -0.7 16,288 - -0.2 16,335 - -0.6 16,369 - +0.1 16,391 - -0.2 16,427 - +0.4 16,453 - +0.1 16,569 + -0.4 16,602 - Shewana3_4155 0.10 -1.2 16,921 + Shewana3_4155 0.44 +1.8 16,951 + Shewana3_4155 0.47 -1.2 17,106 + Shewana3_4155 0.64 +0.7 17,120 - Shewana3_4155 0.65 -0.4 17,294 + Shewana3_4155 0.84 -1.5 17,302 - Shewana3_4155 0.85 +2.7 17,387 + +0.0 17,493 - +0.8 17,513 - +0.2 17,534 + -0.0 17,772 - Shewana3_4156 0.24 +1.5 17,941 - Shewana3_4156 0.37 +0.6 18,104 + Shewana3_4156 0.49 -0.0 18,109 + Shewana3_4156 0.50 +0.3 18,321 + Shewana3_4156 0.65 +0.1 18,408 - Shewana3_4156 0.72 +0.1 18,423 + Shewana3_4156 0.73 +1.0
Or see this region's nucleotide sequence