Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2028

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2026 and Pf1N1B4_2027 are separated by 334 nucleotidesPf1N1B4_2027 and Pf1N1B4_2028 are separated by 11 nucleotidesPf1N1B4_2028 and Pf1N1B4_2029 are separated by 264 nucleotidesPf1N1B4_2029 and Pf1N1B4_2030 are separated by 42 nucleotides Pf1N1B4_2026 - Transcriptional regulator, at 2,313,420 to 2,314,337 _2026 Pf1N1B4_2027 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 2,314,672 to 2,315,163 _2027 Pf1N1B4_2028 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 2,315,175 to 2,316,257 _2028 Pf1N1B4_2029 - FIG00953722: hypothetical protein, at 2,316,522 to 2,316,773 _2029 Pf1N1B4_2030 - lipoprotein, putative, at 2,316,816 to 2,317,394 _2030 Position (kb) 2315 2316 2317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2314.331 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.455 kb on + strandat 2314.456 kb on - strandat 2314.456 kb on - strandat 2314.484 kb on + strandat 2314.484 kb on + strandat 2314.506 kb on - strandat 2314.534 kb on + strandat 2314.535 kb on - strandat 2314.535 kb on - strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.551 kb on + strandat 2314.552 kb on - strandat 2314.552 kb on - strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.553 kb on + strandat 2314.587 kb on + strandat 2314.594 kb on + strandat 2315.763 kb on + strand, within Pf1N1B4_2028at 2316.255 kb on + strandat 2316.255 kb on + strandat 2316.256 kb on - strandat 2316.336 kb on + strandat 2316.337 kb on - strandat 2316.337 kb on - strandat 2316.356 kb on + strandat 2316.356 kb on + strandat 2316.356 kb on + strandat 2316.414 kb on - strandat 2316.422 kb on - strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.478 kb on + strandat 2316.679 kb on - strand, within Pf1N1B4_2029at 2316.679 kb on - strand, within Pf1N1B4_2029at 2316.730 kb on + strand, within Pf1N1B4_2029at 2316.744 kb on + strand, within Pf1N1B4_2029at 2316.744 kb on + strand, within Pf1N1B4_2029at 2316.744 kb on + strand, within Pf1N1B4_2029at 2316.745 kb on - strand, within Pf1N1B4_2029at 2316.813 kb on - strandat 2316.813 kb on - strandat 2316.813 kb on - strandat 2316.813 kb on - strandat 2316.813 kb on - strandat 2317.071 kb on + strand, within Pf1N1B4_2030at 2317.071 kb on + strand, within Pf1N1B4_2030at 2317.071 kb on + strand, within Pf1N1B4_2030at 2317.071 kb on + strand, within Pf1N1B4_2030at 2317.071 kb on + strand, within Pf1N1B4_2030at 2317.071 kb on + strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030at 2317.072 kb on - strand, within Pf1N1B4_2030

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,314,331 + +1.1
2,314,455 + -0.4
2,314,455 + -0.5
2,314,455 + -1.7
2,314,455 + -0.5
2,314,455 + +1.3
2,314,455 + -0.8
2,314,455 + +1.7
2,314,455 + +1.7
2,314,456 - +0.5
2,314,456 - -1.9
2,314,484 + -0.3
2,314,484 + -1.5
2,314,506 - -1.5
2,314,534 + +1.9
2,314,535 - -0.5
2,314,535 - -1.9
2,314,551 + +0.9
2,314,551 + -1.7
2,314,551 + -0.6
2,314,551 + -0.9
2,314,552 - -1.5
2,314,552 - +0.1
2,314,553 + -0.1
2,314,553 + -0.9
2,314,553 + -0.3
2,314,553 + -0.9
2,314,553 + +2.4
2,314,587 + -3.0
2,314,594 + -2.9
2,315,763 + Pf1N1B4_2028 0.54 -2.3
2,316,255 + +0.5
2,316,255 + -3.0
2,316,256 - -0.9
2,316,336 + -0.3
2,316,337 - -1.9
2,316,337 - +0.1
2,316,356 + +0.2
2,316,356 + -0.9
2,316,356 + -0.9
2,316,414 - +0.1
2,316,422 - +0.1
2,316,478 + -0.1
2,316,478 + +0.1
2,316,478 + +0.3
2,316,478 + +0.7
2,316,478 + -0.2
2,316,478 + +0.4
2,316,478 + -3.0
2,316,478 + +0.4
2,316,478 + +0.4
2,316,478 + +0.4
2,316,478 + +1.3
2,316,679 - Pf1N1B4_2029 0.62 +0.1
2,316,679 - Pf1N1B4_2029 0.62 -0.1
2,316,730 + Pf1N1B4_2029 0.83 +1.4
2,316,744 + Pf1N1B4_2029 0.88 +0.9
2,316,744 + Pf1N1B4_2029 0.88 +0.5
2,316,744 + Pf1N1B4_2029 0.88 -0.2
2,316,745 - Pf1N1B4_2029 0.88 +0.1
2,316,813 - +0.4
2,316,813 - -0.3
2,316,813 - +0.1
2,316,813 - +0.1
2,316,813 - -1.5
2,317,071 + Pf1N1B4_2030 0.44 -0.9
2,317,071 + Pf1N1B4_2030 0.44 -1.5
2,317,071 + Pf1N1B4_2030 0.44 -1.0
2,317,071 + Pf1N1B4_2030 0.44 +0.7
2,317,071 + Pf1N1B4_2030 0.44 +0.1
2,317,071 + Pf1N1B4_2030 0.44 +0.1
2,317,072 - Pf1N1B4_2030 0.44 +2.1
2,317,072 - Pf1N1B4_2030 0.44 +0.1
2,317,072 - Pf1N1B4_2030 0.44 +0.7
2,317,072 - Pf1N1B4_2030 0.44 -1.6
2,317,072 - Pf1N1B4_2030 0.44 +0.1
2,317,072 - Pf1N1B4_2030 0.44 -0.3
2,317,072 - Pf1N1B4_2030 0.44 +0.9

Or see this region's nucleotide sequence