Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2026 and Pf1N1B4_2027 are separated by 334 nucleotides Pf1N1B4_2027 and Pf1N1B4_2028 are separated by 11 nucleotides
Pf1N1B4_2026 - Transcriptional regulator, at 2,313,420 to 2,314,337
_2026
Pf1N1B4_2027 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 2,314,672 to 2,315,163
_2027
Pf1N1B4_2028 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 2,315,175 to 2,316,257
_2028
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2313.867 kb on + strand, within Pf1N1B4_2026 at 2313.867 kb on + strand at 2313.867 kb on + strand, within Pf1N1B4_2026 at 2314.018 kb on - strand, within Pf1N1B4_2026 at 2314.082 kb on + strand, within Pf1N1B4_2026 at 2314.083 kb on - strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.088 kb on + strand, within Pf1N1B4_2026 at 2314.089 kb on - strand, within Pf1N1B4_2026 at 2314.089 kb on - strand, within Pf1N1B4_2026 at 2314.089 kb on - strand at 2314.092 kb on + strand, within Pf1N1B4_2026 at 2314.092 kb on + strand, within Pf1N1B4_2026 at 2314.331 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.455 kb on + strand at 2314.456 kb on - strand at 2314.456 kb on - strand at 2314.484 kb on + strand at 2314.484 kb on + strand at 2314.506 kb on - strand at 2314.534 kb on + strand at 2314.535 kb on - strand at 2314.535 kb on - strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.551 kb on + strand at 2314.552 kb on - strand at 2314.552 kb on - strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.553 kb on + strand at 2314.587 kb on + strand at 2314.594 kb on + strand at 2315.763 kb on + strand, within Pf1N1B4_2028
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,313,867 + Pf1N1B4_2026 0.49 +0.1 2,313,867 + +1.1 2,313,867 + Pf1N1B4_2026 0.49 +0.7 2,314,018 - Pf1N1B4_2026 0.65 -1.2 2,314,082 + Pf1N1B4_2026 0.72 +0.5 2,314,083 - Pf1N1B4_2026 0.72 -1.2 2,314,088 + Pf1N1B4_2026 0.73 -0.5 2,314,088 + Pf1N1B4_2026 0.73 +0.1 2,314,088 + Pf1N1B4_2026 0.73 -1.9 2,314,088 + Pf1N1B4_2026 0.73 +0.1 2,314,089 - Pf1N1B4_2026 0.73 -2.0 2,314,089 - Pf1N1B4_2026 0.73 +0.1 2,314,089 - +0.1 2,314,092 + Pf1N1B4_2026 0.73 -1.2 2,314,092 + Pf1N1B4_2026 0.73 -1.5 2,314,331 + +1.1 2,314,455 + -0.4 2,314,455 + -0.5 2,314,455 + -1.7 2,314,455 + -0.5 2,314,455 + +1.3 2,314,455 + -0.8 2,314,455 + +1.7 2,314,455 + +1.7 2,314,456 - +0.5 2,314,456 - -1.9 2,314,484 + -0.3 2,314,484 + -1.5 2,314,506 - -1.5 2,314,534 + +1.9 2,314,535 - -0.5 2,314,535 - -1.9 2,314,551 + +0.9 2,314,551 + -1.7 2,314,551 + -0.6 2,314,551 + -0.9 2,314,552 - -1.5 2,314,552 - +0.1 2,314,553 + -0.1 2,314,553 + -0.9 2,314,553 + -0.3 2,314,553 + -0.9 2,314,553 + +2.4 2,314,587 + -3.0 2,314,594 + -2.9 2,315,763 + Pf1N1B4_2028 0.54 -2.3
Or see this region's nucleotide sequence