Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1994 and Pf1N1B4_1995 overlap by 1 nucleotides Pf1N1B4_1995 and Pf1N1B4_1996 are separated by 4 nucleotides Pf1N1B4_1996 and Pf1N1B4_1997 are separated by 32 nucleotides Pf1N1B4_1997 and Pf1N1B4_1998 are separated by 59 nucleotides
Pf1N1B4_1994 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 2,278,336 to 2,279,544
_1994
Pf1N1B4_1995 - FIG00954044: hypothetical protein, at 2,279,544 to 2,280,194
_1995
Pf1N1B4_1996 - NADH:ubiquinone oxidoreductase 49 kD subunit 7, at 2,280,199 to 2,280,546
_1996
Pf1N1B4_1997 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 2,280,579 to 2,280,878
_1997
Pf1N1B4_1998 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 2,280,938 to 2,281,549
_1998
Position (kb)
2279
2280
2281 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2278.712 kb on + strand, within Pf1N1B4_1994 at 2278.712 kb on + strand, within Pf1N1B4_1994 at 2278.712 kb on + strand, within Pf1N1B4_1994 at 2278.713 kb on - strand, within Pf1N1B4_1994 at 2278.721 kb on + strand, within Pf1N1B4_1994 at 2278.769 kb on - strand, within Pf1N1B4_1994 at 2278.769 kb on - strand, within Pf1N1B4_1994 at 2279.096 kb on - strand, within Pf1N1B4_1994 at 2279.206 kb on + strand, within Pf1N1B4_1994 at 2279.206 kb on + strand, within Pf1N1B4_1994 at 2279.207 kb on - strand, within Pf1N1B4_1994 at 2279.207 kb on - strand, within Pf1N1B4_1994 at 2279.498 kb on + strand at 2279.498 kb on + strand at 2279.499 kb on - strand at 2279.597 kb on + strand at 2279.598 kb on - strand at 2279.777 kb on - strand, within Pf1N1B4_1995 at 2279.958 kb on + strand, within Pf1N1B4_1995 at 2279.958 kb on + strand, within Pf1N1B4_1995 at 2279.958 kb on + strand, within Pf1N1B4_1995 at 2279.959 kb on - strand, within Pf1N1B4_1995 at 2280.013 kb on + strand, within Pf1N1B4_1995 at 2280.013 kb on + strand, within Pf1N1B4_1995 at 2280.014 kb on - strand, within Pf1N1B4_1995 at 2280.014 kb on - strand, within Pf1N1B4_1995 at 2280.014 kb on - strand, within Pf1N1B4_1995 at 2280.017 kb on + strand, within Pf1N1B4_1995 at 2280.017 kb on + strand, within Pf1N1B4_1995 at 2280.017 kb on + strand, within Pf1N1B4_1995 at 2280.018 kb on - strand, within Pf1N1B4_1995 at 2280.018 kb on - strand, within Pf1N1B4_1995 at 2280.251 kb on + strand, within Pf1N1B4_1996 at 2280.252 kb on - strand, within Pf1N1B4_1996 at 2280.275 kb on + strand, within Pf1N1B4_1996 at 2280.278 kb on + strand, within Pf1N1B4_1996 at 2280.278 kb on + strand, within Pf1N1B4_1996 at 2280.278 kb on + strand, within Pf1N1B4_1996 at 2280.278 kb on + strand, within Pf1N1B4_1996 at 2280.279 kb on - strand, within Pf1N1B4_1996 at 2280.279 kb on - strand, within Pf1N1B4_1996 at 2280.279 kb on - strand, within Pf1N1B4_1996 at 2280.303 kb on + strand, within Pf1N1B4_1996 at 2280.303 kb on + strand, within Pf1N1B4_1996 at 2280.304 kb on - strand, within Pf1N1B4_1996 at 2280.362 kb on + strand, within Pf1N1B4_1996 at 2280.362 kb on + strand, within Pf1N1B4_1996 at 2280.362 kb on + strand, within Pf1N1B4_1996 at 2280.363 kb on - strand, within Pf1N1B4_1996 at 2280.363 kb on - strand, within Pf1N1B4_1996 at 2280.556 kb on + strand at 2280.556 kb on + strand at 2280.556 kb on + strand at 2280.894 kb on + strand at 2280.894 kb on + strand at 2280.894 kb on + strand at 2281.112 kb on + strand, within Pf1N1B4_1998 at 2281.113 kb on - strand, within Pf1N1B4_1998 at 2281.113 kb on - strand, within Pf1N1B4_1998 at 2281.113 kb on - strand, within Pf1N1B4_1998
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 2,278,712 + Pf1N1B4_1994 0.31 -0.9 2,278,712 + Pf1N1B4_1994 0.31 -0.4 2,278,712 + Pf1N1B4_1994 0.31 +0.1 2,278,713 - Pf1N1B4_1994 0.31 -0.2 2,278,721 + Pf1N1B4_1994 0.32 -0.9 2,278,769 - Pf1N1B4_1994 0.36 -0.9 2,278,769 - Pf1N1B4_1994 0.36 +0.5 2,279,096 - Pf1N1B4_1994 0.63 -1.1 2,279,206 + Pf1N1B4_1994 0.72 -3.2 2,279,206 + Pf1N1B4_1994 0.72 +0.1 2,279,207 - Pf1N1B4_1994 0.72 -0.5 2,279,207 - Pf1N1B4_1994 0.72 +0.1 2,279,498 + -2.2 2,279,498 + +0.1 2,279,499 - -0.4 2,279,597 + -0.5 2,279,598 - +0.7 2,279,777 - Pf1N1B4_1995 0.36 -0.4 2,279,958 + Pf1N1B4_1995 0.64 -1.9 2,279,958 + Pf1N1B4_1995 0.64 -1.9 2,279,958 + Pf1N1B4_1995 0.64 -1.6 2,279,959 - Pf1N1B4_1995 0.64 +1.1 2,280,013 + Pf1N1B4_1995 0.72 +0.1 2,280,013 + Pf1N1B4_1995 0.72 +1.4 2,280,014 - Pf1N1B4_1995 0.72 -0.5 2,280,014 - Pf1N1B4_1995 0.72 +0.7 2,280,014 - Pf1N1B4_1995 0.72 -0.9 2,280,017 + Pf1N1B4_1995 0.73 -2.2 2,280,017 + Pf1N1B4_1995 0.73 +0.7 2,280,017 + Pf1N1B4_1995 0.73 -1.5 2,280,018 - Pf1N1B4_1995 0.73 +0.1 2,280,018 - Pf1N1B4_1995 0.73 -1.9 2,280,251 + Pf1N1B4_1996 0.15 +1.1 2,280,252 - Pf1N1B4_1996 0.15 -1.5 2,280,275 + Pf1N1B4_1996 0.22 +2.4 2,280,278 + Pf1N1B4_1996 0.23 -0.3 2,280,278 + Pf1N1B4_1996 0.23 +0.1 2,280,278 + Pf1N1B4_1996 0.23 -1.9 2,280,278 + Pf1N1B4_1996 0.23 -1.1 2,280,279 - Pf1N1B4_1996 0.23 +0.4 2,280,279 - Pf1N1B4_1996 0.23 -0.3 2,280,279 - Pf1N1B4_1996 0.23 -0.4 2,280,303 + Pf1N1B4_1996 0.30 -0.8 2,280,303 + Pf1N1B4_1996 0.30 +0.8 2,280,304 - Pf1N1B4_1996 0.30 +1.4 2,280,362 + Pf1N1B4_1996 0.47 -0.0 2,280,362 + Pf1N1B4_1996 0.47 +0.4 2,280,362 + Pf1N1B4_1996 0.47 -1.2 2,280,363 - Pf1N1B4_1996 0.47 -0.6 2,280,363 - Pf1N1B4_1996 0.47 -1.1 2,280,556 + -1.2 2,280,556 + +1.2 2,280,556 + +1.1 2,280,894 + +0.3 2,280,894 + +0.1 2,280,894 + +0.1 2,281,112 + Pf1N1B4_1998 0.28 -1.2 2,281,113 - Pf1N1B4_1998 0.29 -0.9 2,281,113 - Pf1N1B4_1998 0.29 -0.9 2,281,113 - Pf1N1B4_1998 0.29 +0.1
Or see this region's nucleotide sequence