Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1995

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1994 and Pf1N1B4_1995 overlap by 1 nucleotidesPf1N1B4_1995 and Pf1N1B4_1996 are separated by 4 nucleotidesPf1N1B4_1996 and Pf1N1B4_1997 are separated by 32 nucleotidesPf1N1B4_1997 and Pf1N1B4_1998 are separated by 59 nucleotides Pf1N1B4_1994 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 2,278,336 to 2,279,544 _1994 Pf1N1B4_1995 - FIG00954044: hypothetical protein, at 2,279,544 to 2,280,194 _1995 Pf1N1B4_1996 - NADH:ubiquinone oxidoreductase 49 kD subunit 7, at 2,280,199 to 2,280,546 _1996 Pf1N1B4_1997 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 2,280,579 to 2,280,878 _1997 Pf1N1B4_1998 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 2,280,938 to 2,281,549 _1998 Position (kb) 2279 2280 2281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2278.712 kb on + strand, within Pf1N1B4_1994at 2278.712 kb on + strand, within Pf1N1B4_1994at 2278.712 kb on + strand, within Pf1N1B4_1994at 2278.713 kb on - strand, within Pf1N1B4_1994at 2278.721 kb on + strand, within Pf1N1B4_1994at 2278.769 kb on - strand, within Pf1N1B4_1994at 2278.769 kb on - strand, within Pf1N1B4_1994at 2279.096 kb on - strand, within Pf1N1B4_1994at 2279.206 kb on + strand, within Pf1N1B4_1994at 2279.206 kb on + strand, within Pf1N1B4_1994at 2279.207 kb on - strand, within Pf1N1B4_1994at 2279.207 kb on - strand, within Pf1N1B4_1994at 2279.498 kb on + strandat 2279.498 kb on + strandat 2279.499 kb on - strandat 2279.597 kb on + strandat 2279.598 kb on - strandat 2279.777 kb on - strand, within Pf1N1B4_1995at 2279.958 kb on + strand, within Pf1N1B4_1995at 2279.958 kb on + strand, within Pf1N1B4_1995at 2279.958 kb on + strand, within Pf1N1B4_1995at 2279.959 kb on - strand, within Pf1N1B4_1995at 2280.013 kb on + strand, within Pf1N1B4_1995at 2280.013 kb on + strand, within Pf1N1B4_1995at 2280.014 kb on - strand, within Pf1N1B4_1995at 2280.014 kb on - strand, within Pf1N1B4_1995at 2280.014 kb on - strand, within Pf1N1B4_1995at 2280.017 kb on + strand, within Pf1N1B4_1995at 2280.017 kb on + strand, within Pf1N1B4_1995at 2280.017 kb on + strand, within Pf1N1B4_1995at 2280.018 kb on - strand, within Pf1N1B4_1995at 2280.018 kb on - strand, within Pf1N1B4_1995at 2280.251 kb on + strand, within Pf1N1B4_1996at 2280.252 kb on - strand, within Pf1N1B4_1996at 2280.275 kb on + strand, within Pf1N1B4_1996at 2280.278 kb on + strand, within Pf1N1B4_1996at 2280.278 kb on + strand, within Pf1N1B4_1996at 2280.278 kb on + strand, within Pf1N1B4_1996at 2280.278 kb on + strand, within Pf1N1B4_1996at 2280.279 kb on - strand, within Pf1N1B4_1996at 2280.279 kb on - strand, within Pf1N1B4_1996at 2280.279 kb on - strand, within Pf1N1B4_1996at 2280.303 kb on + strand, within Pf1N1B4_1996at 2280.303 kb on + strand, within Pf1N1B4_1996at 2280.304 kb on - strand, within Pf1N1B4_1996at 2280.362 kb on + strand, within Pf1N1B4_1996at 2280.362 kb on + strand, within Pf1N1B4_1996at 2280.362 kb on + strand, within Pf1N1B4_1996at 2280.363 kb on - strand, within Pf1N1B4_1996at 2280.363 kb on - strand, within Pf1N1B4_1996at 2280.556 kb on + strandat 2280.556 kb on + strandat 2280.556 kb on + strandat 2280.894 kb on + strandat 2280.894 kb on + strandat 2280.894 kb on + strandat 2281.112 kb on + strand, within Pf1N1B4_1998at 2281.113 kb on - strand, within Pf1N1B4_1998at 2281.113 kb on - strand, within Pf1N1B4_1998at 2281.113 kb on - strand, within Pf1N1B4_1998

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,278,712 + Pf1N1B4_1994 0.31 -0.9
2,278,712 + Pf1N1B4_1994 0.31 -0.4
2,278,712 + Pf1N1B4_1994 0.31 +0.1
2,278,713 - Pf1N1B4_1994 0.31 -0.2
2,278,721 + Pf1N1B4_1994 0.32 -0.9
2,278,769 - Pf1N1B4_1994 0.36 -0.9
2,278,769 - Pf1N1B4_1994 0.36 +0.5
2,279,096 - Pf1N1B4_1994 0.63 -1.1
2,279,206 + Pf1N1B4_1994 0.72 -3.2
2,279,206 + Pf1N1B4_1994 0.72 +0.1
2,279,207 - Pf1N1B4_1994 0.72 -0.5
2,279,207 - Pf1N1B4_1994 0.72 +0.1
2,279,498 + -2.2
2,279,498 + +0.1
2,279,499 - -0.4
2,279,597 + -0.5
2,279,598 - +0.7
2,279,777 - Pf1N1B4_1995 0.36 -0.4
2,279,958 + Pf1N1B4_1995 0.64 -1.9
2,279,958 + Pf1N1B4_1995 0.64 -1.9
2,279,958 + Pf1N1B4_1995 0.64 -1.6
2,279,959 - Pf1N1B4_1995 0.64 +1.1
2,280,013 + Pf1N1B4_1995 0.72 +0.1
2,280,013 + Pf1N1B4_1995 0.72 +1.4
2,280,014 - Pf1N1B4_1995 0.72 -0.5
2,280,014 - Pf1N1B4_1995 0.72 +0.7
2,280,014 - Pf1N1B4_1995 0.72 -0.9
2,280,017 + Pf1N1B4_1995 0.73 -2.2
2,280,017 + Pf1N1B4_1995 0.73 +0.7
2,280,017 + Pf1N1B4_1995 0.73 -1.5
2,280,018 - Pf1N1B4_1995 0.73 +0.1
2,280,018 - Pf1N1B4_1995 0.73 -1.9
2,280,251 + Pf1N1B4_1996 0.15 +1.1
2,280,252 - Pf1N1B4_1996 0.15 -1.5
2,280,275 + Pf1N1B4_1996 0.22 +2.4
2,280,278 + Pf1N1B4_1996 0.23 -0.3
2,280,278 + Pf1N1B4_1996 0.23 +0.1
2,280,278 + Pf1N1B4_1996 0.23 -1.9
2,280,278 + Pf1N1B4_1996 0.23 -1.1
2,280,279 - Pf1N1B4_1996 0.23 +0.4
2,280,279 - Pf1N1B4_1996 0.23 -0.3
2,280,279 - Pf1N1B4_1996 0.23 -0.4
2,280,303 + Pf1N1B4_1996 0.30 -0.8
2,280,303 + Pf1N1B4_1996 0.30 +0.8
2,280,304 - Pf1N1B4_1996 0.30 +1.4
2,280,362 + Pf1N1B4_1996 0.47 -0.0
2,280,362 + Pf1N1B4_1996 0.47 +0.4
2,280,362 + Pf1N1B4_1996 0.47 -1.2
2,280,363 - Pf1N1B4_1996 0.47 -0.6
2,280,363 - Pf1N1B4_1996 0.47 -1.1
2,280,556 + -1.2
2,280,556 + +1.2
2,280,556 + +1.1
2,280,894 + +0.3
2,280,894 + +0.1
2,280,894 + +0.1
2,281,112 + Pf1N1B4_1998 0.28 -1.2
2,281,113 - Pf1N1B4_1998 0.29 -0.9
2,281,113 - Pf1N1B4_1998 0.29 -0.9
2,281,113 - Pf1N1B4_1998 0.29 +0.1

Or see this region's nucleotide sequence