Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12585

Experiment: Temperature shift 30_to_34; with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_34; with MOPS
2,840,560	+		PFLU_RS12580	0.41	-0.7
2,840,560	+		PFLU_RS12580	0.41	+0.7
2,840,560	+		PFLU_RS12580	0.41	-0.5
2,840,560	+		PFLU_RS12580	0.41	-0.9
2,840,560	+		PFLU_RS12580	0.41	-1.1
2,840,560	+		PFLU_RS12580	0.41	-1.7
2,840,561	-		PFLU_RS12580	0.41	+0.2
2,840,561	-		PFLU_RS12580	0.41	+0.6
2,840,561	-		PFLU_RS12580	0.41	+0.5
2,840,569	+		PFLU_RS12580	0.42	+0.2
2,840,569	+		PFLU_RS12580	0.42	+0.9
2,840,569	+		PFLU_RS12580	0.42	+1.3
2,840,570	-		PFLU_RS12580	0.42	+1.6
2,840,570	-		PFLU_RS12580	0.42	-0.2
2,840,608	+		PFLU_RS12580	0.46	+0.1
2,840,608	+		PFLU_RS12580	0.46	-1.9
2,840,608	+		PFLU_RS12580	0.46	-0.1
2,840,608	+		PFLU_RS12580	0.46	-1.9
2,840,608	+		PFLU_RS12580	0.46	-0.5
2,840,608	+		PFLU_RS12580	0.46	+0.6
2,840,608	+		PFLU_RS12580	0.46	+0.9
2,840,608	+		PFLU_RS12580	0.46	+0.0
2,840,608	+		PFLU_RS12580	0.46	+1.6
2,840,609	-		PFLU_RS12580	0.46	-0.8
2,840,609	-		PFLU_RS12580	0.46	+0.3
2,840,609	-		PFLU_RS12580	0.46	+0.6
2,840,609	-		PFLU_RS12580	0.46	+0.9
2,840,782	+		PFLU_RS12580	0.65	+0.2
2,840,783	-		PFLU_RS12580	0.66	-0.9
2,840,783	-		PFLU_RS12580	0.66	-0.3
2,840,783	-		PFLU_RS12580	0.66	+0.2
2,840,812	+		PFLU_RS12580	0.69	+0.3
2,840,812	+		PFLU_RS12580	0.69	+1.0
2,840,812	+		PFLU_RS12580	0.69	-1.1
2,840,812	+		PFLU_RS12580	0.69	+1.3
2,840,813	-		PFLU_RS12580	0.69	-0.3
2,840,813	-		PFLU_RS12580	0.69	-0.1
2,840,813	-		PFLU_RS12580	0.69	+0.1
2,840,962	+		PFLU_RS12580	0.85	-1.1
2,840,962	+		PFLU_RS12580	0.85	-0.7
2,840,962	+		PFLU_RS12580	0.85	+0.3
2,840,962	+		PFLU_RS12580	0.85	-0.7
2,840,963	-		PFLU_RS12580	0.85	+0.9
2,840,963	-		PFLU_RS12580	0.85	-0.3
2,840,963	-		PFLU_RS12580	0.85	+1.2
2,840,963	-		PFLU_RS12580	0.85	-1.0
2,840,963	-		PFLU_RS12580	0.85	+0.1
2,841,001	+		PFLU_RS12580	0.90	+1.7
2,841,002	-		PFLU_RS12580	0.90	+2.3
2,841,002	-		PFLU_RS12580	0.90	+0.5
2,841,056	+				+0.3
2,841,056	+				-2.0
2,841,147	+				-1.7
2,841,148	-				-0.7
2,841,148	-				+0.4
2,841,154	+				+1.1
2,841,154	+				+0.3
2,841,155	-				-0.2
2,841,169	-				-0.9
2,841,230	+		PFLU_RS31580	0.25	+1.4
2,841,231	-		PFLU_RS31580	0.26	+1.3
2,841,231	-		PFLU_RS31580	0.26	+0.9
2,841,231	-		PFLU_RS31580	0.26	-0.1
2,841,231	-		PFLU_RS31580	0.26	+0.9
2,841,231	-		PFLU_RS31580	0.26	+0.0
2,841,231	-		PFLU_RS31580	0.26	-0.7
2,841,231	-		PFLU_RS31580	0.26	-0.6
2,841,231	-		PFLU_RS31580	0.26	+0.6
2,841,304	+		PFLU_RS31580	0.62	+0.1
2,841,304	+		PFLU_RS31580	0.62	-0.7
2,841,304	+		PFLU_RS31580	0.62	-2.0
2,841,304	+		PFLU_RS31580	0.62	-2.0
2,841,305	-		PFLU_RS31580	0.62	+0.7
2,841,305	-		PFLU_RS31580	0.62	+0.0
2,841,305	-		PFLU_RS31580	0.62	+1.2
2,841,305	-		PFLU_RS31580	0.62	-2.1
2,841,366	+				+0.5
2,841,367	-				-0.7
2,841,452	+				+0.3
2,841,452	+				-0.6
2,841,453	-				-0.4
2,841,453	-				-0.0
2,841,453	-				+0.5
2,841,486	+				+0.4
2,841,487	-				+1.9
2,841,503	+				+0.3
2,841,503	+				+1.9
2,841,503	+				+0.3
2,841,503	+				+0.4
2,841,504	-				+0.9
2,841,504	-				-0.1
2,841,504	-				-0.0
2,841,504	-				+0.9
2,841,592	+		PFLU_RS12585	0.11	-1.1
2,841,592	+		PFLU_RS12585	0.11	-0.1
2,841,592	+		PFLU_RS12585	0.11	+1.2
2,841,592	+		PFLU_RS12585	0.11	-0.5
2,841,593	-		PFLU_RS12585	0.11	-2.4
2,841,593	-		PFLU_RS12585	0.11	-0.4
2,841,725	+		PFLU_RS12585	0.18	+0.2
2,841,726	-		PFLU_RS12585	0.18	-0.6
2,841,782	-		PFLU_RS12585	0.21	+0.3
2,841,839	+		PFLU_RS12585	0.24	-1.9
2,841,839	+		PFLU_RS12585	0.24	+1.1
2,841,839	+		PFLU_RS12585	0.24	+0.5
2,841,839	+		PFLU_RS12585	0.24	+1.6
2,841,839	+		PFLU_RS12585	0.24	-0.2
2,841,840	-		PFLU_RS12585	0.24	-1.5
2,841,840	-		PFLU_RS12585	0.24	-0.7
2,841,840	-		PFLU_RS12585	0.24	+0.2
2,841,866	+		PFLU_RS12585	0.25	+1.0
2,841,867	-		PFLU_RS12585	0.25	+0.9
2,842,084	+		PFLU_RS12585	0.36	+0.9
2,842,084	+		PFLU_RS12585	0.36	+0.9
2,842,084	+		PFLU_RS12585	0.36	+0.9
2,842,085	-		PFLU_RS12585	0.36	+0.4
2,842,085	-		PFLU_RS12585	0.36	-0.8
2,842,190	+		PFLU_RS12585	0.42	+1.3
2,842,190	+		PFLU_RS12585	0.42	+0.9
2,842,379	+		PFLU_RS12585	0.52	+1.2
2,842,379	+		PFLU_RS12585	0.52	-2.8
2,842,880	+		PFLU_RS12585	0.77	+0.5
2,842,880	+		PFLU_RS12585	0.77	-0.9
2,842,881	-		PFLU_RS12585	0.77	+0.0
2,842,892	-		PFLU_RS12585	0.78	+0.4
2,842,915	-		PFLU_RS12585	0.79	-0.3
2,842,915	-		PFLU_RS12585	0.79	-0.5
2,842,915	-		PFLU_RS12585	0.79	-0.4
2,842,952	+		PFLU_RS12585	0.81	-1.6
2,842,988	+		PFLU_RS12585	0.83	+1.5
2,842,989	-		PFLU_RS12585	0.83	-1.3
2,842,989	-		PFLU_RS12585	0.83	-0.4
2,842,989	-		PFLU_RS12585	0.83	-0.9
2,843,085	-		PFLU_RS12585	0.88	+0.7
2,843,164	+				-0.1
2,843,328	+				-1.0
2,843,328	+				-0.4
2,843,328	+				+0.7
2,843,329	-				+0.6
2,843,492	+				-1.1
2,843,492	+				-1.4
2,843,492	+				-0.4
2,843,492	+				+0.5
2,843,493	-				-0.8
2,843,493	-				-1.2
2,843,493	-				+0.3
2,843,511	-				+0.1
2,843,521	-				-1.2
2,843,523	+				-0.8
2,843,523	+				+0.2
2,843,746	+		PFLU_RS12590	0.23	-0.1
2,843,845	+		PFLU_RS12590	0.35	-0.3
2,843,845	+		PFLU_RS12590	0.35	-1.1
2,843,845	+		PFLU_RS12590	0.35	+2.7
2,843,846	-		PFLU_RS12590	0.35	+0.8
2,843,846	-		PFLU_RS12590	0.35	+0.3
2,843,932	+		PFLU_RS12590	0.44	-0.5
2,843,933	-		PFLU_RS12590	0.44	+1.3
2,843,965	-		PFLU_RS12590	0.48	-0.5
2,843,992	+		PFLU_RS12590	0.51	+0.6
2,843,993	-		PFLU_RS12590	0.51	-0.1
2,843,993	-		PFLU_RS12590	0.51	+2.1
2,844,013	+		PFLU_RS12590	0.53	-0.6
2,844,013	+		PFLU_RS12590	0.53	+0.9
2,844,013	+		PFLU_RS12590	0.53	+0.0
2,844,014	-		PFLU_RS12590	0.53	-0.1
2,844,014	-		PFLU_RS12590	0.53	+0.5
2,844,097	+		PFLU_RS12590	0.63	+1.1
2,844,097	+		PFLU_RS12590	0.63	-3.1
2,844,097	+		PFLU_RS12590	0.63	-0.1
2,844,097	+		PFLU_RS12590	0.63	+0.6
2,844,097	+		PFLU_RS12590	0.63	+0.9
2,844,097	+		PFLU_RS12590	0.63	+1.1
2,844,097	+		PFLU_RS12590	0.63	+0.7
2,844,097	+		PFLU_RS12590	0.63	-1.5
2,844,097	+		PFLU_RS12590	0.63	-0.1
2,844,098	-		PFLU_RS12590	0.63	-0.3
2,844,098	-		PFLU_RS12590	0.63	-0.9
2,844,098	-		PFLU_RS12590	0.63	-0.2
2,844,098	-		PFLU_RS12590	0.63	-0.5
2,844,098	-		PFLU_RS12590	0.63	-1.4
2,844,098	-		PFLU_RS12590	0.63	-0.3
2,844,098	-		PFLU_RS12590	0.63	+0.8
2,844,138	+		PFLU_RS12590	0.67	+0.3
2,844,138	+		PFLU_RS12590	0.67	+0.0
2,844,147	+		PFLU_RS12590	0.68	+0.1
2,844,311	-		PFLU_RS12590	0.87	+0.1