Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05957

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05956 and H281DRAFT_05957 overlap by 4 nucleotidesH281DRAFT_05957 and H281DRAFT_05958 are separated by 63 nucleotides H281DRAFT_05956: H281DRAFT_05956 - Predicted arabinose efflux permease, MFS family, at 96,738 to 98,018 _05956 H281DRAFT_05957: H281DRAFT_05957 - Predicted metal-dependent hydrolase, TIM-barrel fold, at 98,015 to 99,010 _05957 H281DRAFT_05958: H281DRAFT_05958 - Outer membrane protein (porin), at 99,074 to 100,225 _05958 Position (kb) 98 99 100Strain fitness (log2 ratio) -1 0 1at 97.052 kb on - strand, within H281DRAFT_05956at 97.259 kb on - strand, within H281DRAFT_05956at 98.047 kb on - strandat 98.476 kb on - strand, within H281DRAFT_05957at 99.116 kb on - strandat 99.196 kb on - strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.321 kb on + strand, within H281DRAFT_05958at 99.427 kb on - strand, within H281DRAFT_05958at 99.564 kb on + strand, within H281DRAFT_05958at 99.789 kb on + strand, within H281DRAFT_05958

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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97,052 - H281DRAFT_05956 0.25 +1.3
97,259 - H281DRAFT_05956 0.41 +0.2
98,047 - +0.9
98,476 - H281DRAFT_05957 0.46 -0.2
99,116 - +0.4
99,196 - H281DRAFT_05958 0.11 -0.1
99,321 + H281DRAFT_05958 0.21 +1.1
99,321 + H281DRAFT_05958 0.21 +1.3
99,321 + H281DRAFT_05958 0.21 +0.7
99,427 - H281DRAFT_05958 0.31 -1.3
99,564 + H281DRAFT_05958 0.43 -0.1
99,789 + H281DRAFT_05958 0.62 -0.3

Or see this region's nucleotide sequence