Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05880

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05878 and H281DRAFT_05879 are separated by 31 nucleotidesH281DRAFT_05879 and H281DRAFT_05880 are separated by 75 nucleotidesH281DRAFT_05880 and H281DRAFT_05881 are separated by 104 nucleotides H281DRAFT_05878: H281DRAFT_05878 - Multidrug efflux pump subunit AcrB, at 14,151 to 17,288 _05878 H281DRAFT_05879: H281DRAFT_05879 - DNA-binding transcriptional regulator, MarR family, at 17,320 to 18,009 _05879 H281DRAFT_05880: H281DRAFT_05880 - Aspartate/methionine/tyrosine aminotransferase, at 18,085 to 19,209 _05880 H281DRAFT_05881: H281DRAFT_05881 - D-amino-acid dehydrogenase, at 19,314 to 20,558 _05881 Position (kb) 18 19 20Strain fitness (log2 ratio) -1 0 1at 17.655 kb on - strand, within H281DRAFT_05879at 18.121 kb on - strandat 18.470 kb on - strand, within H281DRAFT_05880at 18.550 kb on - strand, within H281DRAFT_05880at 18.961 kb on + strand, within H281DRAFT_05880at 18.990 kb on - strand, within H281DRAFT_05880at 19.227 kb on + strandat 20.134 kb on + strandat 20.153 kb on + strand, within H281DRAFT_05881

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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17,655 - H281DRAFT_05879 0.49 -0.5
18,121 - +0.5
18,470 - H281DRAFT_05880 0.34 +0.7
18,550 - H281DRAFT_05880 0.41 -0.4
18,961 + H281DRAFT_05880 0.78 -0.6
18,990 - H281DRAFT_05880 0.80 +0.1
19,227 + +0.8
20,134 + +0.7
20,153 + H281DRAFT_05881 0.67 +0.7

Or see this region's nucleotide sequence