Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05848

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05847 and H281DRAFT_05848 are separated by 347 nucleotidesH281DRAFT_05848 and H281DRAFT_05849 are separated by 158 nucleotides H281DRAFT_05847: H281DRAFT_05847 - indolepyruvate ferredoxin oxidoreductase, at 125,341 to 128,940 _05847 H281DRAFT_05848: H281DRAFT_05848 - hypothetical protein, at 129,288 to 129,485 _05848 H281DRAFT_05849: H281DRAFT_05849 - 4-hydroxyphenylpyruvate dioxygenase, at 129,644 to 130,741 _05849 Position (kb) 129 130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 128.363 kb on + strand, within H281DRAFT_05847at 128.364 kb on - strand, within H281DRAFT_05847at 128.586 kb on - strandat 128.601 kb on - strandat 128.767 kb on - strandat 128.840 kb on + strandat 128.840 kb on + strandat 128.841 kb on - strandat 128.841 kb on - strandat 128.864 kb on + strandat 128.864 kb on + strandat 128.864 kb on + strandat 128.864 kb on + strandat 128.864 kb on + strandat 128.865 kb on - strandat 128.865 kb on - strandat 128.890 kb on + strandat 128.891 kb on - strandat 128.926 kb on + strandat 128.941 kb on + strandat 128.941 kb on + strandat 128.941 kb on + strandat 128.947 kb on + strandat 128.947 kb on + strandat 128.947 kb on + strandat 128.947 kb on + strandat 128.948 kb on - strandat 128.948 kb on - strandat 129.007 kb on + strandat 129.025 kb on - strandat 129.025 kb on - strandat 129.038 kb on - strandat 129.047 kb on + strandat 129.047 kb on + strandat 129.047 kb on + strandat 129.047 kb on + strandat 129.048 kb on - strandat 129.048 kb on - strandat 129.048 kb on - strandat 129.149 kb on + strandat 129.149 kb on + strandat 129.150 kb on - strandat 129.202 kb on - strandat 129.202 kb on - strandat 129.219 kb on + strandat 129.219 kb on + strandat 129.219 kb on + strandat 129.219 kb on + strandat 129.219 kb on + strandat 129.220 kb on - strandat 129.220 kb on - strandat 129.220 kb on - strandat 129.283 kb on + strandat 129.283 kb on + strandat 129.284 kb on - strandat 129.284 kb on - strandat 129.297 kb on - strandat 129.302 kb on + strandat 129.494 kb on + strandat 129.504 kb on + strandat 129.505 kb on - strandat 129.550 kb on - strandat 129.569 kb on + strandat 129.570 kb on - strandat 129.593 kb on - strandat 129.897 kb on + strand, within H281DRAFT_05849at 129.897 kb on + strand, within H281DRAFT_05849at 129.897 kb on + strand, within H281DRAFT_05849at 129.897 kb on + strand, within H281DRAFT_05849at 129.898 kb on - strand, within H281DRAFT_05849at 129.900 kb on + strand, within H281DRAFT_05849at 129.900 kb on + strand, within H281DRAFT_05849at 129.900 kb on + strand, within H281DRAFT_05849at 129.901 kb on - strand, within H281DRAFT_05849at 129.961 kb on - strand, within H281DRAFT_05849at 129.961 kb on - strand, within H281DRAFT_05849at 130.063 kb on + strand, within H281DRAFT_05849at 130.063 kb on + strand, within H281DRAFT_05849at 130.064 kb on - strand, within H281DRAFT_05849at 130.119 kb on - strand, within H281DRAFT_05849at 130.140 kb on + strand, within H281DRAFT_05849at 130.141 kb on - strand, within H281DRAFT_05849at 130.141 kb on - strand, within H281DRAFT_05849at 130.174 kb on - strand, within H281DRAFT_05849at 130.232 kb on - strand, within H281DRAFT_05849at 130.233 kb on + strand, within H281DRAFT_05849at 130.233 kb on + strand, within H281DRAFT_05849at 130.233 kb on + strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.234 kb on - strand, within H281DRAFT_05849at 130.296 kb on + strand, within H281DRAFT_05849at 130.296 kb on + strand, within H281DRAFT_05849at 130.297 kb on - strand, within H281DRAFT_05849at 130.297 kb on - strand, within H281DRAFT_05849at 130.301 kb on - strand, within H281DRAFT_05849at 130.362 kb on + strand, within H281DRAFT_05849at 130.362 kb on + strand, within H281DRAFT_05849

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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128,363 + H281DRAFT_05847 0.84 -0.7
128,364 - H281DRAFT_05847 0.84 +0.0
128,586 - -0.3
128,601 - -0.8
128,767 - -0.3
128,840 + -0.1
128,840 + -0.0
128,841 - -0.4
128,841 - +0.4
128,864 + -0.9
128,864 + -0.0
128,864 + -1.7
128,864 + -0.1
128,864 + -0.5
128,865 - -0.9
128,865 - -0.4
128,890 + -0.1
128,891 - -0.3
128,926 + +0.3
128,941 + +1.0
128,941 + -2.5
128,941 + +0.3
128,947 + +1.0
128,947 + +0.0
128,947 + +1.5
128,947 + -0.0
128,948 - -0.4
128,948 - +0.1
129,007 + +0.1
129,025 - +1.0
129,025 - -0.1
129,038 - -1.1
129,047 + +0.2
129,047 + +0.1
129,047 + -1.1
129,047 + +0.1
129,048 - +0.4
129,048 - +1.3
129,048 - +0.0
129,149 + -3.0
129,149 + -0.4
129,150 - +0.1
129,202 - -0.4
129,202 - +0.6
129,219 + -0.9
129,219 + -0.1
129,219 + +0.4
129,219 + -0.9
129,219 + +0.0
129,220 - +0.7
129,220 - -0.5
129,220 - -0.1
129,283 + +2.6
129,283 + +0.2
129,284 - +0.4
129,284 - -1.0
129,297 - -0.2
129,302 + -0.6
129,494 + -0.2
129,504 + -0.4
129,505 - -0.9
129,550 - +0.4
129,569 + -0.1
129,570 - +0.3
129,593 - +0.0
129,897 + H281DRAFT_05849 0.23 +0.4
129,897 + H281DRAFT_05849 0.23 -1.8
129,897 + H281DRAFT_05849 0.23 +1.1
129,897 + H281DRAFT_05849 0.23 -1.0
129,898 - H281DRAFT_05849 0.23 +0.8
129,900 + H281DRAFT_05849 0.23 +0.0
129,900 + H281DRAFT_05849 0.23 -1.5
129,900 + H281DRAFT_05849 0.23 -0.5
129,901 - H281DRAFT_05849 0.23 -0.2
129,961 - H281DRAFT_05849 0.29 +0.4
129,961 - H281DRAFT_05849 0.29 -0.7
130,063 + H281DRAFT_05849 0.38 -0.2
130,063 + H281DRAFT_05849 0.38 -3.1
130,064 - H281DRAFT_05849 0.38 -0.2
130,119 - H281DRAFT_05849 0.43 -0.3
130,140 + H281DRAFT_05849 0.45 +0.2
130,141 - H281DRAFT_05849 0.45 -0.3
130,141 - H281DRAFT_05849 0.45 +1.0
130,174 - H281DRAFT_05849 0.48 +0.4
130,232 - H281DRAFT_05849 0.54 -0.5
130,233 + H281DRAFT_05849 0.54 +1.0
130,233 + H281DRAFT_05849 0.54 +1.0
130,233 + H281DRAFT_05849 0.54 +0.4
130,234 - H281DRAFT_05849 0.54 -0.2
130,234 - H281DRAFT_05849 0.54 -0.2
130,234 - H281DRAFT_05849 0.54 +1.0
130,234 - H281DRAFT_05849 0.54 +0.1
130,234 - H281DRAFT_05849 0.54 +1.0
130,234 - H281DRAFT_05849 0.54 +0.2
130,296 + H281DRAFT_05849 0.59 -0.7
130,296 + H281DRAFT_05849 0.59 -0.3
130,297 - H281DRAFT_05849 0.59 +0.4
130,297 - H281DRAFT_05849 0.59 -0.6
130,301 - H281DRAFT_05849 0.60 -0.1
130,362 + H281DRAFT_05849 0.65 -0.3
130,362 + H281DRAFT_05849 0.65 +1.1

Or see this region's nucleotide sequence