Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05771

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05770 and H281DRAFT_05771 are separated by 344 nucleotidesH281DRAFT_05771 and H281DRAFT_05772 are separated by 175 nucleotides H281DRAFT_05770: H281DRAFT_05770 - flagellar protein FlgJ, at 43,200 to 44,204 _05770 H281DRAFT_05771: H281DRAFT_05771 - c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains, at 44,549 to 45,337 _05771 H281DRAFT_05772: H281DRAFT_05772 - flagellar hook-associated protein 1 FlgK, at 45,513 to 47,486 _05772 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1at 43.974 kb on + strand, within H281DRAFT_05770at 43.975 kb on - strand, within H281DRAFT_05770at 44.029 kb on - strand, within H281DRAFT_05770at 44.049 kb on + strand, within H281DRAFT_05770at 44.163 kb on + strandat 44.280 kb on - strandat 44.280 kb on - strandat 44.397 kb on + strandat 44.422 kb on + strandat 44.431 kb on + strandat 44.951 kb on + strand, within H281DRAFT_05771at 44.951 kb on + strand, within H281DRAFT_05771at 44.952 kb on - strand, within H281DRAFT_05771at 44.954 kb on + strand, within H281DRAFT_05771at 44.954 kb on + strand, within H281DRAFT_05771at 44.955 kb on - strand, within H281DRAFT_05771at 44.955 kb on - strand, within H281DRAFT_05771at 44.955 kb on - strand, within H281DRAFT_05771at 44.972 kb on + strand, within H281DRAFT_05771at 44.972 kb on + strand, within H281DRAFT_05771at 44.973 kb on - strand, within H281DRAFT_05771at 44.973 kb on - strand, within H281DRAFT_05771at 45.005 kb on + strand, within H281DRAFT_05771at 45.005 kb on + strand, within H281DRAFT_05771at 45.456 kb on - strandat 45.462 kb on + strandat 45.462 kb on + strandat 45.462 kb on + strandat 45.463 kb on - strandat 45.615 kb on - strandat 45.615 kb on - strandat 45.655 kb on - strandat 45.655 kb on - strandat 45.655 kb on - strandat 45.711 kb on + strand, within H281DRAFT_05772at 45.720 kb on + strand, within H281DRAFT_05772at 45.720 kb on + strand, within H281DRAFT_05772at 45.720 kb on + strand, within H281DRAFT_05772at 45.741 kb on - strand, within H281DRAFT_05772at 45.774 kb on + strand, within H281DRAFT_05772at 45.849 kb on + strand, within H281DRAFT_05772at 45.850 kb on - strand, within H281DRAFT_05772at 45.896 kb on + strand, within H281DRAFT_05772at 45.963 kb on + strand, within H281DRAFT_05772at 46.027 kb on - strand, within H281DRAFT_05772at 46.176 kb on + strand, within H281DRAFT_05772at 46.176 kb on + strand, within H281DRAFT_05772at 46.281 kb on + strand, within H281DRAFT_05772at 46.282 kb on - strand, within H281DRAFT_05772

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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43,974 + H281DRAFT_05770 0.77 +1.6
43,975 - H281DRAFT_05770 0.77 +0.6
44,029 - H281DRAFT_05770 0.82 +1.3
44,049 + H281DRAFT_05770 0.84 +0.7
44,163 + +1.2
44,280 - +0.8
44,280 - +0.4
44,397 + -0.8
44,422 + +0.4
44,431 + -1.3
44,951 + H281DRAFT_05771 0.51 +0.1
44,951 + H281DRAFT_05771 0.51 -0.4
44,952 - H281DRAFT_05771 0.51 -0.7
44,954 + H281DRAFT_05771 0.51 -0.3
44,954 + H281DRAFT_05771 0.51 +0.2
44,955 - H281DRAFT_05771 0.51 +0.1
44,955 - H281DRAFT_05771 0.51 +1.4
44,955 - H281DRAFT_05771 0.51 +0.3
44,972 + H281DRAFT_05771 0.54 +1.0
44,972 + H281DRAFT_05771 0.54 +0.4
44,973 - H281DRAFT_05771 0.54 +0.3
44,973 - H281DRAFT_05771 0.54 +0.1
45,005 + H281DRAFT_05771 0.58 -0.1
45,005 + H281DRAFT_05771 0.58 +0.8
45,456 - +1.2
45,462 + -0.6
45,462 + +0.3
45,462 + -0.6
45,463 - -1.5
45,615 - -0.4
45,615 - -0.8
45,655 - -0.7
45,655 - -0.3
45,655 - -2.3
45,711 + H281DRAFT_05772 0.10 +1.5
45,720 + H281DRAFT_05772 0.10 -0.3
45,720 + H281DRAFT_05772 0.10 -1.0
45,720 + H281DRAFT_05772 0.10 -0.2
45,741 - H281DRAFT_05772 0.12 +1.3
45,774 + H281DRAFT_05772 0.13 -0.8
45,849 + H281DRAFT_05772 0.17 -0.0
45,850 - H281DRAFT_05772 0.17 -0.6
45,896 + H281DRAFT_05772 0.19 +0.6
45,963 + H281DRAFT_05772 0.23 +0.7
46,027 - H281DRAFT_05772 0.26 -0.9
46,176 + H281DRAFT_05772 0.34 +0.2
46,176 + H281DRAFT_05772 0.34 +0.1
46,281 + H281DRAFT_05772 0.39 -1.6
46,282 - H281DRAFT_05772 0.39 -0.6

Or see this region's nucleotide sequence