Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05220

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05219 and H281DRAFT_05220 are separated by 66 nucleotidesH281DRAFT_05220 and H281DRAFT_05221 are separated by 406 nucleotides H281DRAFT_05219: H281DRAFT_05219 - transcriptional regulator, LysR family, at 180,758 to 181,642 _05219 H281DRAFT_05220: H281DRAFT_05220 - transcriptional regulator, AsnC family, at 181,709 to 182,167 _05220 H281DRAFT_05221: H281DRAFT_05221 - Saccharopine dehydrogenase, NADP-dependent, at 182,574 to 183,680 _05221 Position (kb) 181 182 183Strain fitness (log2 ratio) -1 0 1 2at 180.730 kb on + strandat 180.731 kb on - strandat 180.752 kb on + strandat 180.953 kb on + strand, within H281DRAFT_05219at 180.953 kb on + strand, within H281DRAFT_05219at 181.098 kb on - strand, within H281DRAFT_05219at 181.268 kb on + strand, within H281DRAFT_05219at 181.295 kb on - strand, within H281DRAFT_05219at 181.922 kb on + strand, within H281DRAFT_05220at 181.922 kb on + strand, within H281DRAFT_05220at 181.928 kb on + strand, within H281DRAFT_05220at 181.928 kb on + strand, within H281DRAFT_05220at 182.008 kb on - strand, within H281DRAFT_05220at 182.034 kb on - strand, within H281DRAFT_05220at 182.120 kb on - strand, within H281DRAFT_05220at 182.484 kb on - strandat 182.532 kb on + strandat 182.532 kb on + strandat 182.574 kb on - strandat 182.574 kb on - strandat 182.845 kb on - strand, within H281DRAFT_05221at 183.090 kb on + strand, within H281DRAFT_05221

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
180,730 + +0.1
180,731 - -0.0
180,752 + -0.2
180,953 + H281DRAFT_05219 0.22 -1.1
180,953 + H281DRAFT_05219 0.22 +0.2
181,098 - H281DRAFT_05219 0.38 +0.1
181,268 + H281DRAFT_05219 0.58 +1.6
181,295 - H281DRAFT_05219 0.61 -0.3
181,922 + H281DRAFT_05220 0.46 +0.8
181,922 + H281DRAFT_05220 0.46 +0.2
181,928 + H281DRAFT_05220 0.48 +1.0
181,928 + H281DRAFT_05220 0.48 +0.1
182,008 - H281DRAFT_05220 0.65 +1.9
182,034 - H281DRAFT_05220 0.71 -0.1
182,120 - H281DRAFT_05220 0.90 +0.0
182,484 - +0.5
182,532 + -0.3
182,532 + +0.4
182,574 - +0.5
182,574 - -0.2
182,845 - H281DRAFT_05221 0.24 +0.5
183,090 + H281DRAFT_05221 0.47 -0.7

Or see this region's nucleotide sequence