Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05062

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05060 and H281DRAFT_05061 are separated by 145 nucleotidesH281DRAFT_05061 and H281DRAFT_05062 are separated by 161 nucleotidesH281DRAFT_05062 and H281DRAFT_05063 are separated by 75 nucleotides H281DRAFT_05060: H281DRAFT_05060 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 1 to 432 _05060 H281DRAFT_05061: H281DRAFT_05061 - Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC, at 578 to 1,054 _05061 H281DRAFT_05062: H281DRAFT_05062 - MFS transporter, putative metabolite:H+ symporter, at 1,216 to 2,655 _05062 H281DRAFT_05063: H281DRAFT_05063 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit, at 2,731 to 4,689 _05063 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.561 kb on + strandat 0.599 kb on - strandat 1.152 kb on + strandat 1.174 kb on - strandat 1.174 kb on - strandat 1.394 kb on + strand, within H281DRAFT_05062at 1.458 kb on - strand, within H281DRAFT_05062at 2.081 kb on - strand, within H281DRAFT_05062at 2.140 kb on - strand, within H281DRAFT_05062at 2.165 kb on + strand, within H281DRAFT_05062at 2.165 kb on + strand, within H281DRAFT_05062at 2.165 kb on + strand, within H281DRAFT_05062at 2.165 kb on + strand, within H281DRAFT_05062at 2.166 kb on - strand, within H281DRAFT_05062at 2.166 kb on - strand, within H281DRAFT_05062at 2.570 kb on - strandat 2.706 kb on + strandat 2.717 kb on - strandat 2.991 kb on - strand, within H281DRAFT_05063at 2.991 kb on - strand, within H281DRAFT_05063at 3.020 kb on - strand, within H281DRAFT_05063at 3.086 kb on + strand, within H281DRAFT_05063at 3.117 kb on + strand, within H281DRAFT_05063at 3.138 kb on + strand, within H281DRAFT_05063at 3.139 kb on - strand, within H281DRAFT_05063at 3.139 kb on - strand, within H281DRAFT_05063at 3.139 kb on - strand, within H281DRAFT_05063

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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561 + +0.6
599 - +0.1
1,152 + -0.4
1,174 - -0.5
1,174 - +0.4
1,394 + H281DRAFT_05062 0.12 +0.4
1,458 - H281DRAFT_05062 0.17 -1.2
2,081 - H281DRAFT_05062 0.60 -0.0
2,140 - H281DRAFT_05062 0.64 -0.1
2,165 + H281DRAFT_05062 0.66 -0.4
2,165 + H281DRAFT_05062 0.66 +0.6
2,165 + H281DRAFT_05062 0.66 -1.5
2,165 + H281DRAFT_05062 0.66 +0.4
2,166 - H281DRAFT_05062 0.66 -0.4
2,166 - H281DRAFT_05062 0.66 +0.2
2,570 - +0.8
2,706 + -0.3
2,717 - +1.1
2,991 - H281DRAFT_05063 0.13 -1.8
2,991 - H281DRAFT_05063 0.13 -0.4
3,020 - H281DRAFT_05063 0.15 +0.4
3,086 + H281DRAFT_05063 0.18 -0.3
3,117 + H281DRAFT_05063 0.20 -0.3
3,138 + H281DRAFT_05063 0.21 -0.0
3,139 - H281DRAFT_05063 0.21 +0.3
3,139 - H281DRAFT_05063 0.21 +0.0
3,139 - H281DRAFT_05063 0.21 +0.2

Or see this region's nucleotide sequence