Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04954

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04953 and H281DRAFT_04954 are separated by 358 nucleotidesH281DRAFT_04954 and H281DRAFT_04955 are separated by 275 nucleotidesH281DRAFT_04955 and H281DRAFT_04956 are separated by 52 nucleotides H281DRAFT_04953: H281DRAFT_04953 - acetyl-coenzyme A synthetase, at 137,723 to 139,705 _04953 H281DRAFT_04954: H281DRAFT_04954 - Threonine/homoserine efflux transporter RhtA, at 140,064 to 140,957 _04954 H281DRAFT_04955: H281DRAFT_04955 - TIGR00645 family protein, at 141,233 to 141,799 _04955 H281DRAFT_04956: H281DRAFT_04956 - fumarase, class I, homodimeric, at 141,852 to 143,375 _04956 Position (kb) 140 141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 139.273 kb on + strand, within H281DRAFT_04953at 139.275 kb on + strand, within H281DRAFT_04953at 139.275 kb on + strand, within H281DRAFT_04953at 139.276 kb on - strand, within H281DRAFT_04953at 139.359 kb on + strand, within H281DRAFT_04953at 139.359 kb on + strand, within H281DRAFT_04953at 139.359 kb on + strand, within H281DRAFT_04953at 139.360 kb on - strand, within H281DRAFT_04953at 139.453 kb on - strand, within H281DRAFT_04953at 139.489 kb on - strand, within H281DRAFT_04953at 139.579 kb on - strandat 139.611 kb on + strandat 139.612 kb on - strandat 139.932 kb on + strandat 139.957 kb on + strandat 139.958 kb on - strandat 140.003 kb on + strandat 140.004 kb on - strandat 140.025 kb on + strandat 140.028 kb on + strandat 140.028 kb on + strandat 140.029 kb on - strandat 140.029 kb on - strandat 140.037 kb on - strandat 140.037 kb on - strandat 140.045 kb on + strandat 140.046 kb on - strandat 140.130 kb on - strandat 140.393 kb on + strand, within H281DRAFT_04954at 140.556 kb on + strand, within H281DRAFT_04954at 140.556 kb on + strand, within H281DRAFT_04954at 140.556 kb on + strand, within H281DRAFT_04954at 140.556 kb on + strand, within H281DRAFT_04954at 140.556 kb on + strand, within H281DRAFT_04954at 140.557 kb on - strand, within H281DRAFT_04954at 140.598 kb on - strand, within H281DRAFT_04954at 140.729 kb on - strand, within H281DRAFT_04954at 140.836 kb on - strand, within H281DRAFT_04954at 140.955 kb on + strandat 140.956 kb on - strandat 140.956 kb on - strandat 141.010 kb on + strandat 141.011 kb on - strandat 141.011 kb on - strandat 141.605 kb on - strand, within H281DRAFT_04955at 141.906 kb on + strandat 141.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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139,273 + H281DRAFT_04953 0.78 -2.2
139,275 + H281DRAFT_04953 0.78 -2.8
139,275 + H281DRAFT_04953 0.78 -1.5
139,276 - H281DRAFT_04953 0.78 -0.8
139,359 + H281DRAFT_04953 0.83 -3.1
139,359 + H281DRAFT_04953 0.83 -1.7
139,359 + H281DRAFT_04953 0.83 -2.4
139,360 - H281DRAFT_04953 0.83 -4.3
139,453 - H281DRAFT_04953 0.87 -1.0
139,489 - H281DRAFT_04953 0.89 -1.8
139,579 - +1.0
139,611 + -0.5
139,612 - -3.2
139,932 + +0.2
139,957 + -0.5
139,958 - -0.1
140,003 + -0.2
140,004 - +0.9
140,025 + -1.0
140,028 + -0.2
140,028 + -1.4
140,029 - -0.0
140,029 - +0.0
140,037 - -0.7
140,037 - -0.5
140,045 + +1.0
140,046 - +0.1
140,130 - -0.8
140,393 + H281DRAFT_04954 0.37 -1.3
140,556 + H281DRAFT_04954 0.55 -0.4
140,556 + H281DRAFT_04954 0.55 +0.2
140,556 + H281DRAFT_04954 0.55 +0.3
140,556 + H281DRAFT_04954 0.55 +0.4
140,556 + H281DRAFT_04954 0.55 +0.1
140,557 - H281DRAFT_04954 0.55 +0.0
140,598 - H281DRAFT_04954 0.60 +0.2
140,729 - H281DRAFT_04954 0.74 -0.1
140,836 - H281DRAFT_04954 0.86 -0.4
140,955 + +0.1
140,956 - +0.6
140,956 - -0.0
141,010 + +2.3
141,011 - +1.0
141,011 - +0.6
141,605 - H281DRAFT_04955 0.66 +2.2
141,906 + -1.9
141,907 - -0.2

Or see this region's nucleotide sequence