Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04587

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04586 and H281DRAFT_04587 are separated by 10 nucleotidesH281DRAFT_04587 and H281DRAFT_04588 are separated by 36 nucleotidesH281DRAFT_04588 and H281DRAFT_04589 are separated by 2 nucleotides H281DRAFT_04586: H281DRAFT_04586 - hypothetical protein, at 318,297 to 319,493 _04586 H281DRAFT_04587: H281DRAFT_04587 - hypothetical protein, at 319,504 to 320,631 _04587 H281DRAFT_04588: H281DRAFT_04588 - Acyl dehydratase, at 320,668 to 321,126 _04588 H281DRAFT_04589: H281DRAFT_04589 - Acyl dehydratase, at 321,129 to 321,608 _04589 Position (kb) 319 320 321Strain fitness (log2 ratio) -2 -1 0 1 2 3at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.521 kb on + strand, within H281DRAFT_04586at 318.522 kb on - strand, within H281DRAFT_04586at 318.562 kb on + strand, within H281DRAFT_04586at 318.607 kb on - strand, within H281DRAFT_04586at 318.631 kb on - strand, within H281DRAFT_04586at 318.634 kb on - strand, within H281DRAFT_04586at 318.634 kb on - strand, within H281DRAFT_04586at 318.747 kb on + strand, within H281DRAFT_04586at 318.747 kb on + strand, within H281DRAFT_04586at 318.747 kb on + strand, within H281DRAFT_04586at 318.748 kb on - strand, within H281DRAFT_04586at 318.748 kb on - strand, within H281DRAFT_04586at 318.748 kb on - strand, within H281DRAFT_04586at 318.887 kb on + strand, within H281DRAFT_04586at 318.887 kb on + strand, within H281DRAFT_04586at 318.888 kb on - strand, within H281DRAFT_04586at 318.952 kb on + strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 318.953 kb on - strand, within H281DRAFT_04586at 319.002 kb on + strand, within H281DRAFT_04586at 319.002 kb on + strand, within H281DRAFT_04586at 319.003 kb on - strand, within H281DRAFT_04586at 319.011 kb on + strand, within H281DRAFT_04586at 319.012 kb on - strand, within H281DRAFT_04586at 319.012 kb on - strand, within H281DRAFT_04586at 319.012 kb on - strand, within H281DRAFT_04586at 319.121 kb on - strand, within H281DRAFT_04586at 319.295 kb on + strand, within H281DRAFT_04586at 319.295 kb on + strand, within H281DRAFT_04586at 319.295 kb on + strand, within H281DRAFT_04586at 319.296 kb on - strand, within H281DRAFT_04586at 319.337 kb on - strand, within H281DRAFT_04586at 319.407 kb on + strandat 319.714 kb on - strand, within H281DRAFT_04587at 319.763 kb on - strand, within H281DRAFT_04587at 319.898 kb on - strand, within H281DRAFT_04587at 319.918 kb on - strand, within H281DRAFT_04587at 319.959 kb on + strand, within H281DRAFT_04587at 319.997 kb on - strand, within H281DRAFT_04587at 319.997 kb on - strand, within H281DRAFT_04587at 320.192 kb on - strand, within H281DRAFT_04587at 320.260 kb on + strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.369 kb on - strand, within H281DRAFT_04587at 320.438 kb on + strand, within H281DRAFT_04587at 320.438 kb on + strand, within H281DRAFT_04587at 320.438 kb on + strand, within H281DRAFT_04587at 320.439 kb on - strand, within H281DRAFT_04587at 320.548 kb on - strandat 320.550 kb on + strandat 320.551 kb on - strandat 320.585 kb on + strandat 320.630 kb on - strandat 320.661 kb on + strandat 320.680 kb on + strandat 320.681 kb on - strandat 320.724 kb on + strand, within H281DRAFT_04588at 320.725 kb on - strand, within H281DRAFT_04588at 320.845 kb on - strand, within H281DRAFT_04588at 320.845 kb on - strand, within H281DRAFT_04588at 320.845 kb on - strand, within H281DRAFT_04588at 320.845 kb on - strand, within H281DRAFT_04588at 320.927 kb on + strand, within H281DRAFT_04588at 320.928 kb on - strand, within H281DRAFT_04588at 321.073 kb on - strand, within H281DRAFT_04588at 321.124 kb on + strandat 321.445 kb on + strand, within H281DRAFT_04589at 321.445 kb on + strand, within H281DRAFT_04589at 321.526 kb on + strand, within H281DRAFT_04589at 321.527 kb on - strand, within H281DRAFT_04589at 321.527 kb on - strand, within H281DRAFT_04589at 321.527 kb on - strand, within H281DRAFT_04589at 321.527 kb on - strand, within H281DRAFT_04589

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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318,521 + H281DRAFT_04586 0.19 +0.6
318,521 + H281DRAFT_04586 0.19 -0.7
318,521 + H281DRAFT_04586 0.19 +1.0
318,521 + H281DRAFT_04586 0.19 +0.4
318,521 + H281DRAFT_04586 0.19 -0.4
318,522 - H281DRAFT_04586 0.19 -0.1
318,562 + H281DRAFT_04586 0.22 -0.6
318,607 - H281DRAFT_04586 0.26 +0.7
318,631 - H281DRAFT_04586 0.28 -0.1
318,634 - H281DRAFT_04586 0.28 -0.1
318,634 - H281DRAFT_04586 0.28 +0.8
318,747 + H281DRAFT_04586 0.38 -0.6
318,747 + H281DRAFT_04586 0.38 -0.2
318,747 + H281DRAFT_04586 0.38 -0.8
318,748 - H281DRAFT_04586 0.38 -0.0
318,748 - H281DRAFT_04586 0.38 +0.1
318,748 - H281DRAFT_04586 0.38 +0.0
318,887 + H281DRAFT_04586 0.49 +1.5
318,887 + H281DRAFT_04586 0.49 +0.8
318,888 - H281DRAFT_04586 0.49 +0.3
318,952 + H281DRAFT_04586 0.55 +1.0
318,953 - H281DRAFT_04586 0.55 +0.8
318,953 - H281DRAFT_04586 0.55 +0.3
318,953 - H281DRAFT_04586 0.55 -0.2
318,953 - H281DRAFT_04586 0.55 +1.5
319,002 + H281DRAFT_04586 0.59 +0.5
319,002 + H281DRAFT_04586 0.59 +1.3
319,003 - H281DRAFT_04586 0.59 -0.6
319,011 + H281DRAFT_04586 0.60 +0.5
319,012 - H281DRAFT_04586 0.60 +0.1
319,012 - H281DRAFT_04586 0.60 +0.6
319,012 - H281DRAFT_04586 0.60 +0.1
319,121 - H281DRAFT_04586 0.69 +0.1
319,295 + H281DRAFT_04586 0.83 +1.0
319,295 + H281DRAFT_04586 0.83 -0.1
319,295 + H281DRAFT_04586 0.83 +0.0
319,296 - H281DRAFT_04586 0.83 -1.4
319,337 - H281DRAFT_04586 0.87 -0.1
319,407 + +0.2
319,714 - H281DRAFT_04587 0.19 +0.6
319,763 - H281DRAFT_04587 0.23 +1.0
319,898 - H281DRAFT_04587 0.35 +0.8
319,918 - H281DRAFT_04587 0.37 -0.3
319,959 + H281DRAFT_04587 0.40 +0.4
319,997 - H281DRAFT_04587 0.44 +0.4
319,997 - H281DRAFT_04587 0.44 -0.4
320,192 - H281DRAFT_04587 0.61 +0.4
320,260 + H281DRAFT_04587 0.67 +0.3
320,369 - H281DRAFT_04587 0.77 -1.2
320,369 - H281DRAFT_04587 0.77 +0.1
320,369 - H281DRAFT_04587 0.77 +0.5
320,369 - H281DRAFT_04587 0.77 +3.1
320,438 + H281DRAFT_04587 0.83 +0.1
320,438 + H281DRAFT_04587 0.83 -1.2
320,438 + H281DRAFT_04587 0.83 -0.2
320,439 - H281DRAFT_04587 0.83 +0.3
320,548 - +0.1
320,550 + -0.4
320,551 - +1.1
320,585 + -0.5
320,630 - +3.1
320,661 + +0.5
320,680 + +0.2
320,681 - -2.1
320,724 + H281DRAFT_04588 0.12 +0.2
320,725 - H281DRAFT_04588 0.12 +0.9
320,845 - H281DRAFT_04588 0.39 -0.8
320,845 - H281DRAFT_04588 0.39 -0.4
320,845 - H281DRAFT_04588 0.39 -0.1
320,845 - H281DRAFT_04588 0.39 -0.3
320,927 + H281DRAFT_04588 0.56 +1.3
320,928 - H281DRAFT_04588 0.57 +0.8
321,073 - H281DRAFT_04588 0.88 +0.8
321,124 + +0.4
321,445 + H281DRAFT_04589 0.66 -0.6
321,445 + H281DRAFT_04589 0.66 -0.3
321,526 + H281DRAFT_04589 0.83 +0.8
321,527 - H281DRAFT_04589 0.83 +0.1
321,527 - H281DRAFT_04589 0.83 +0.2
321,527 - H281DRAFT_04589 0.83 +1.1
321,527 - H281DRAFT_04589 0.83 -0.2

Or see this region's nucleotide sequence