Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04341

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04340 and H281DRAFT_04341 overlap by 8 nucleotidesH281DRAFT_04341 and H281DRAFT_04342 overlap by 4 nucleotidesH281DRAFT_04342 and H281DRAFT_04343 are separated by 42 nucleotides H281DRAFT_04340: H281DRAFT_04340 - 23S rRNA pseudouridine955/2504/2580 synthase, at 59,558 to 60,595 _04340 H281DRAFT_04341: H281DRAFT_04341 - phosphoglycolate phosphatase, at 60,588 to 61,247 _04341 H281DRAFT_04342: H281DRAFT_04342 - Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase, at 61,244 to 61,660 _04342 H281DRAFT_04343: H281DRAFT_04343 - protease-4, at 61,703 to 62,707 _04343 Position (kb) 60 61 62Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 59.686 kb on + strand, within H281DRAFT_04340at 59.687 kb on - strand, within H281DRAFT_04340at 59.711 kb on + strand, within H281DRAFT_04340at 59.711 kb on + strand, within H281DRAFT_04340at 59.711 kb on + strand, within H281DRAFT_04340at 59.712 kb on - strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.039 kb on + strand, within H281DRAFT_04340at 60.040 kb on - strand, within H281DRAFT_04340at 60.040 kb on - strand, within H281DRAFT_04340at 60.040 kb on - strand, within H281DRAFT_04340at 60.107 kb on - strand, within H281DRAFT_04340at 60.107 kb on - strand, within H281DRAFT_04340at 60.113 kb on + strand, within H281DRAFT_04340at 60.114 kb on - strand, within H281DRAFT_04340at 60.114 kb on - strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.116 kb on + strand, within H281DRAFT_04340at 60.117 kb on - strand, within H281DRAFT_04340at 60.117 kb on - strand, within H281DRAFT_04340at 60.188 kb on + strand, within H281DRAFT_04340at 60.188 kb on + strand, within H281DRAFT_04340at 60.281 kb on + strand, within H281DRAFT_04340at 60.555 kb on + strandat 60.593 kb on + strandat 60.593 kb on + strandat 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.726 kb on + strand, within H281DRAFT_04341at 60.727 kb on - strand, within H281DRAFT_04341at 60.727 kb on - strand, within H281DRAFT_04341at 60.825 kb on + strand, within H281DRAFT_04341at 60.825 kb on + strand, within H281DRAFT_04341at 60.826 kb on - strand, within H281DRAFT_04341at 60.901 kb on - strand, within H281DRAFT_04341at 61.149 kb on + strand, within H281DRAFT_04341at 61.150 kb on - strand, within H281DRAFT_04341at 61.150 kb on - strand, within H281DRAFT_04341at 61.194 kb on + strandat 61.194 kb on + strandat 61.194 kb on + strandat 61.194 kb on + strandat 61.194 kb on + strandat 61.195 kb on - strandat 61.195 kb on - strandat 61.195 kb on - strandat 61.279 kb on + strandat 61.280 kb on - strandat 61.413 kb on - strand, within H281DRAFT_04342at 61.413 kb on - strandat 61.486 kb on - strand, within H281DRAFT_04342at 61.488 kb on - strand, within H281DRAFT_04342at 61.585 kb on - strand, within H281DRAFT_04342at 61.677 kb on + strandat 61.678 kb on - strandat 61.678 kb on - strandat 61.678 kb on - strandat 61.712 kb on - strandat 61.911 kb on + strand, within H281DRAFT_04343at 61.912 kb on - strand, within H281DRAFT_04343at 61.912 kb on - strand, within H281DRAFT_04343at 61.912 kb on - strand, within H281DRAFT_04343at 62.225 kb on + strand, within H281DRAFT_04343at 62.226 kb on - strand, within H281DRAFT_04343at 62.226 kb on - strand, within H281DRAFT_04343at 62.226 kb on - strand, within H281DRAFT_04343at 62.226 kb on - strand, within H281DRAFT_04343

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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59,686 + H281DRAFT_04340 0.12 -0.5
59,687 - H281DRAFT_04340 0.12 +0.7
59,711 + H281DRAFT_04340 0.15 +0.7
59,711 + H281DRAFT_04340 0.15 -0.7
59,711 + H281DRAFT_04340 0.15 -1.2
59,712 - H281DRAFT_04340 0.15 -0.2
60,039 + H281DRAFT_04340 0.46 -1.4
60,039 + H281DRAFT_04340 0.46 +0.5
60,039 + H281DRAFT_04340 0.46 -0.3
60,039 + H281DRAFT_04340 0.46 +0.2
60,039 + H281DRAFT_04340 0.46 +0.7
60,039 + H281DRAFT_04340 0.46 -0.6
60,040 - H281DRAFT_04340 0.46 -0.2
60,040 - H281DRAFT_04340 0.46 +0.6
60,040 - H281DRAFT_04340 0.46 +0.6
60,107 - H281DRAFT_04340 0.53 +0.5
60,107 - H281DRAFT_04340 0.53 +0.1
60,113 + H281DRAFT_04340 0.53 +0.7
60,114 - H281DRAFT_04340 0.54 +0.6
60,114 - H281DRAFT_04340 0.54 -0.1
60,116 + H281DRAFT_04340 0.54 +0.2
60,116 + H281DRAFT_04340 0.54 +0.9
60,116 + H281DRAFT_04340 0.54 +1.0
60,116 + H281DRAFT_04340 0.54 -0.4
60,116 + H281DRAFT_04340 0.54 +0.5
60,116 + H281DRAFT_04340 0.54 -0.2
60,117 - H281DRAFT_04340 0.54 -1.5
60,117 - H281DRAFT_04340 0.54 +0.2
60,188 + H281DRAFT_04340 0.61 -0.1
60,188 + H281DRAFT_04340 0.61 +1.0
60,281 + H281DRAFT_04340 0.70 +0.8
60,555 + +0.0
60,593 + -1.4
60,593 + +0.7
60,726 + H281DRAFT_04341 0.21 +2.1
60,726 + H281DRAFT_04341 0.21 -0.4
60,726 + H281DRAFT_04341 0.21 +1.7
60,726 + H281DRAFT_04341 0.21 -3.9
60,726 + H281DRAFT_04341 0.21 -0.3
60,726 + H281DRAFT_04341 0.21 +0.7
60,726 + H281DRAFT_04341 0.21 +1.1
60,726 + H281DRAFT_04341 0.21 -0.2
60,727 - H281DRAFT_04341 0.21 -1.4
60,727 - H281DRAFT_04341 0.21 -0.2
60,825 + H281DRAFT_04341 0.36 +1.2
60,825 + H281DRAFT_04341 0.36 -0.4
60,826 - H281DRAFT_04341 0.36 -0.5
60,901 - H281DRAFT_04341 0.47 -0.0
61,149 + H281DRAFT_04341 0.85 +1.2
61,150 - H281DRAFT_04341 0.85 +0.5
61,150 - H281DRAFT_04341 0.85 -2.6
61,194 + -1.8
61,194 + -0.1
61,194 + +0.7
61,194 + -0.7
61,194 + -0.1
61,195 - +0.3
61,195 - -1.2
61,195 - -0.8
61,279 + +0.1
61,280 - +0.6
61,413 - H281DRAFT_04342 0.41 +0.1
61,413 - +1.8
61,486 - H281DRAFT_04342 0.58 -0.1
61,488 - H281DRAFT_04342 0.59 +1.0
61,585 - H281DRAFT_04342 0.82 +1.2
61,677 + -0.3
61,678 - +0.7
61,678 - -1.1
61,678 - -1.2
61,712 - -0.3
61,911 + H281DRAFT_04343 0.21 +0.7
61,912 - H281DRAFT_04343 0.21 -0.7
61,912 - H281DRAFT_04343 0.21 -0.1
61,912 - H281DRAFT_04343 0.21 +1.4
62,225 + H281DRAFT_04343 0.52 +0.4
62,226 - H281DRAFT_04343 0.52 -0.1
62,226 - H281DRAFT_04343 0.52 -0.0
62,226 - H281DRAFT_04343 0.52 +0.1
62,226 - H281DRAFT_04343 0.52 +0.4

Or see this region's nucleotide sequence