Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04333

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04332 and H281DRAFT_04333 are separated by 54 nucleotidesH281DRAFT_04333 and H281DRAFT_04334 overlap by 4 nucleotides H281DRAFT_04332: H281DRAFT_04332 - transporter, UIT6 family, at 47,799 to 49,226 _04332 H281DRAFT_04333: H281DRAFT_04333 - Lactate dehydrogenase, at 49,281 to 50,270 _04333 H281DRAFT_04334: H281DRAFT_04334 - DNA recombination protein RmuC, at 50,267 to 51,715 _04334 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2 3at 49.265 kb on + strandat 49.267 kb on + strandat 49.268 kb on - strandat 49.491 kb on - strand, within H281DRAFT_04333at 49.557 kb on - strand, within H281DRAFT_04333at 49.791 kb on + strand, within H281DRAFT_04333at 49.791 kb on + strand, within H281DRAFT_04333at 49.845 kb on + strand, within H281DRAFT_04333at 49.845 kb on + strand, within H281DRAFT_04333at 49.845 kb on + strand, within H281DRAFT_04333at 49.846 kb on - strand, within H281DRAFT_04333at 49.902 kb on + strand, within H281DRAFT_04333at 49.904 kb on + strand, within H281DRAFT_04333at 49.905 kb on - strandat 50.126 kb on + strand, within H281DRAFT_04333at 50.230 kb on - strandat 50.426 kb on + strand, within H281DRAFT_04334at 50.426 kb on + strand, within H281DRAFT_04334at 50.427 kb on - strand, within H281DRAFT_04334at 50.427 kb on - strand, within H281DRAFT_04334at 50.427 kb on - strand, within H281DRAFT_04334at 50.861 kb on - strand, within H281DRAFT_04334at 51.045 kb on + strand, within H281DRAFT_04334

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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49,265 + +2.8
49,267 + +0.1
49,268 - +0.4
49,491 - H281DRAFT_04333 0.21 -0.6
49,557 - H281DRAFT_04333 0.28 -0.6
49,791 + H281DRAFT_04333 0.52 +0.1
49,791 + H281DRAFT_04333 0.52 -1.4
49,845 + H281DRAFT_04333 0.57 -0.1
49,845 + H281DRAFT_04333 0.57 -0.8
49,845 + H281DRAFT_04333 0.57 -0.1
49,846 - H281DRAFT_04333 0.57 -0.4
49,902 + H281DRAFT_04333 0.63 -1.2
49,904 + H281DRAFT_04333 0.63 -0.9
49,905 - -0.8
50,126 + H281DRAFT_04333 0.85 +0.1
50,230 - -0.6
50,426 + H281DRAFT_04334 0.11 +1.2
50,426 + H281DRAFT_04334 0.11 -1.2
50,427 - H281DRAFT_04334 0.11 +0.2
50,427 - H281DRAFT_04334 0.11 -0.0
50,427 - H281DRAFT_04334 0.11 -0.4
50,861 - H281DRAFT_04334 0.41 -0.7
51,045 + H281DRAFT_04334 0.54 -0.2

Or see this region's nucleotide sequence