Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04045

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04043 and H281DRAFT_04044 are separated by 56 nucleotidesH281DRAFT_04044 and H281DRAFT_04045 overlap by 1 nucleotidesH281DRAFT_04045 and H281DRAFT_04046 overlap by 4 nucleotidesH281DRAFT_04046 and H281DRAFT_04047 are separated by 7 nucleotides H281DRAFT_04043: H281DRAFT_04043 - Pimeloyl-ACP methyl ester carboxylesterase, at 142,780 to 143,745 _04043 H281DRAFT_04044: H281DRAFT_04044 - D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55, at 143,802 to 144,635 _04044 H281DRAFT_04045: H281DRAFT_04045 - L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58, at 144,635 to 145,747 _04045 H281DRAFT_04046: H281DRAFT_04046 - glutathione transport system permease protein, at 145,744 to 146,649 _04046 H281DRAFT_04047: H281DRAFT_04047 - glutathione transport system permease protein, at 146,657 to 147,577 _04047 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 143.709 kb on - strandat 143.746 kb on + strandat 143.746 kb on + strandat 143.746 kb on + strandat 143.747 kb on - strandat 144.203 kb on - strand, within H281DRAFT_04044at 144.290 kb on + strand, within H281DRAFT_04044at 144.290 kb on + strand, within H281DRAFT_04044at 144.290 kb on + strand, within H281DRAFT_04044at 144.358 kb on + strand, within H281DRAFT_04044at 144.689 kb on + strandat 144.852 kb on + strand, within H281DRAFT_04045at 144.852 kb on + strand, within H281DRAFT_04045at 145.155 kb on + strand, within H281DRAFT_04045at 145.156 kb on - strand, within H281DRAFT_04045at 145.278 kb on + strand, within H281DRAFT_04045at 145.279 kb on - strand, within H281DRAFT_04045at 145.332 kb on + strand, within H281DRAFT_04045at 145.450 kb on + strand, within H281DRAFT_04045at 145.450 kb on + strand, within H281DRAFT_04045at 145.607 kb on + strand, within H281DRAFT_04045at 145.849 kb on - strand, within H281DRAFT_04046at 145.986 kb on - strand, within H281DRAFT_04046at 145.986 kb on - strand, within H281DRAFT_04046at 146.019 kb on + strand, within H281DRAFT_04046at 146.075 kb on + strand, within H281DRAFT_04046at 146.075 kb on + strand, within H281DRAFT_04046at 146.075 kb on + strand, within H281DRAFT_04046at 146.075 kb on + strand, within H281DRAFT_04046at 146.076 kb on - strand, within H281DRAFT_04046at 146.076 kb on - strand, within H281DRAFT_04046at 146.076 kb on - strand, within H281DRAFT_04046at 146.101 kb on - strand, within H281DRAFT_04046at 146.273 kb on + strand, within H281DRAFT_04046at 146.273 kb on + strand, within H281DRAFT_04046at 146.276 kb on + strand, within H281DRAFT_04046at 146.277 kb on - strand, within H281DRAFT_04046at 146.383 kb on - strand, within H281DRAFT_04046at 146.448 kb on - strand, within H281DRAFT_04046at 146.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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143,709 - +1.1
143,746 + +0.2
143,746 + -0.0
143,746 + +0.2
143,747 - -0.8
144,203 - H281DRAFT_04044 0.48 -0.1
144,290 + H281DRAFT_04044 0.59 -0.6
144,290 + H281DRAFT_04044 0.59 -0.2
144,290 + H281DRAFT_04044 0.59 +0.6
144,358 + H281DRAFT_04044 0.67 -0.1
144,689 + +2.1
144,852 + H281DRAFT_04045 0.19 +0.1
144,852 + H281DRAFT_04045 0.19 +0.1
145,155 + H281DRAFT_04045 0.47 +0.1
145,156 - H281DRAFT_04045 0.47 +0.9
145,278 + H281DRAFT_04045 0.58 +1.2
145,279 - H281DRAFT_04045 0.58 +0.2
145,332 + H281DRAFT_04045 0.63 -2.7
145,450 + H281DRAFT_04045 0.73 +0.8
145,450 + H281DRAFT_04045 0.73 -0.1
145,607 + H281DRAFT_04045 0.87 +0.9
145,849 - H281DRAFT_04046 0.12 -1.0
145,986 - H281DRAFT_04046 0.27 +0.3
145,986 - H281DRAFT_04046 0.27 +0.1
146,019 + H281DRAFT_04046 0.30 -0.9
146,075 + H281DRAFT_04046 0.37 -0.8
146,075 + H281DRAFT_04046 0.37 -0.7
146,075 + H281DRAFT_04046 0.37 -0.2
146,075 + H281DRAFT_04046 0.37 +0.2
146,076 - H281DRAFT_04046 0.37 -0.2
146,076 - H281DRAFT_04046 0.37 +0.0
146,076 - H281DRAFT_04046 0.37 -1.5
146,101 - H281DRAFT_04046 0.39 -0.9
146,273 + H281DRAFT_04046 0.58 -1.8
146,273 + H281DRAFT_04046 0.58 -0.7
146,276 + H281DRAFT_04046 0.59 +0.5
146,277 - H281DRAFT_04046 0.59 -0.1
146,383 - H281DRAFT_04046 0.71 -0.7
146,448 - H281DRAFT_04046 0.78 -0.3
146,692 - -0.2

Or see this region's nucleotide sequence