Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03598

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03597 and H281DRAFT_03598 are separated by 449 nucleotidesH281DRAFT_03598 and H281DRAFT_03599 are separated by 70 nucleotidesH281DRAFT_03599 and H281DRAFT_03600 overlap by 14 nucleotides H281DRAFT_03597: H281DRAFT_03597 - arsenate reductase, at 106,536 to 106,919 _03597 H281DRAFT_03598: H281DRAFT_03598 - hypothetical protein, at 107,369 to 107,659 _03598 H281DRAFT_03599: H281DRAFT_03599 - Putative zinc-finger, at 107,730 to 107,933 _03599 H281DRAFT_03600: H281DRAFT_03600 - RNA polymerase sigma-70 factor, ECF subfamily, at 107,920 to 108,675 _03600 Position (kb) 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 106.520 kb on - strandat 106.549 kb on - strandat 106.596 kb on - strand, within H281DRAFT_03597at 106.605 kb on + strand, within H281DRAFT_03597at 106.605 kb on + strand, within H281DRAFT_03597at 106.605 kb on + strand, within H281DRAFT_03597at 106.606 kb on - strand, within H281DRAFT_03597at 106.606 kb on - strand, within H281DRAFT_03597at 106.768 kb on + strand, within H281DRAFT_03597at 106.783 kb on + strand, within H281DRAFT_03597at 106.931 kb on + strandat 106.931 kb on + strandat 106.932 kb on - strandat 106.932 kb on - strandat 106.938 kb on + strandat 106.981 kb on + strandat 106.983 kb on + strandat 106.983 kb on + strandat 106.983 kb on + strandat 106.984 kb on - strandat 106.984 kb on - strandat 107.030 kb on - strandat 107.100 kb on - strandat 107.148 kb on - strandat 107.258 kb on + strandat 107.300 kb on + strandat 107.301 kb on - strandat 107.301 kb on - strandat 107.306 kb on - strandat 107.380 kb on - strandat 107.380 kb on - strandat 107.447 kb on + strand, within H281DRAFT_03598at 107.447 kb on + strand, within H281DRAFT_03598at 107.448 kb on - strand, within H281DRAFT_03598at 107.448 kb on - strand, within H281DRAFT_03598at 107.553 kb on + strand, within H281DRAFT_03598at 107.553 kb on + strand, within H281DRAFT_03598at 107.778 kb on - strand, within H281DRAFT_03599at 107.778 kb on - strand, within H281DRAFT_03599at 107.921 kb on + strandat 107.921 kb on + strandat 107.921 kb on + strandat 107.922 kb on - strandat 108.096 kb on + strand, within H281DRAFT_03600at 108.115 kb on + strand, within H281DRAFT_03600at 108.307 kb on - strand, within H281DRAFT_03600at 108.348 kb on + strand, within H281DRAFT_03600at 108.348 kb on + strand, within H281DRAFT_03600at 108.349 kb on - strand, within H281DRAFT_03600at 108.488 kb on + strand, within H281DRAFT_03600at 108.532 kb on - strand, within H281DRAFT_03600

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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106,520 - +0.0
106,549 - +0.2
106,596 - H281DRAFT_03597 0.16 -0.0
106,605 + H281DRAFT_03597 0.18 -0.6
106,605 + H281DRAFT_03597 0.18 -0.6
106,605 + H281DRAFT_03597 0.18 -0.0
106,606 - H281DRAFT_03597 0.18 +0.6
106,606 - H281DRAFT_03597 0.18 +0.4
106,768 + H281DRAFT_03597 0.60 -0.3
106,783 + H281DRAFT_03597 0.64 +0.3
106,931 + +0.0
106,931 + +2.4
106,932 - -0.7
106,932 - -0.1
106,938 + +0.8
106,981 + -0.1
106,983 + +1.4
106,983 + -1.0
106,983 + -1.9
106,984 - +0.4
106,984 - +0.1
107,030 - +3.5
107,100 - +0.5
107,148 - -0.4
107,258 + -0.4
107,300 + +0.9
107,301 - -0.4
107,301 - +0.0
107,306 - -2.3
107,380 - +0.8
107,380 - -0.1
107,447 + H281DRAFT_03598 0.27 -0.2
107,447 + H281DRAFT_03598 0.27 -2.7
107,448 - H281DRAFT_03598 0.27 +1.1
107,448 - H281DRAFT_03598 0.27 -0.8
107,553 + H281DRAFT_03598 0.63 -0.6
107,553 + H281DRAFT_03598 0.63 +0.1
107,778 - H281DRAFT_03599 0.24 +0.4
107,778 - H281DRAFT_03599 0.24 +0.6
107,921 + +0.3
107,921 + +0.4
107,921 + -1.0
107,922 - +0.0
108,096 + H281DRAFT_03600 0.23 +0.0
108,115 + H281DRAFT_03600 0.26 +0.1
108,307 - H281DRAFT_03600 0.51 +1.1
108,348 + H281DRAFT_03600 0.57 -0.9
108,348 + H281DRAFT_03600 0.57 +1.1
108,349 - H281DRAFT_03600 0.57 +0.3
108,488 + H281DRAFT_03600 0.75 -0.4
108,532 - H281DRAFT_03600 0.81 -2.9

Or see this region's nucleotide sequence