Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03596

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03594 and H281DRAFT_03595 are separated by 24 nucleotidesH281DRAFT_03595 and H281DRAFT_03596 are separated by 91 nucleotidesH281DRAFT_03596 and H281DRAFT_03597 are separated by 402 nucleotides H281DRAFT_03594: H281DRAFT_03594 - ParB family protein, at 103,667 to 104,725 _03594 H281DRAFT_03595: H281DRAFT_03595 - plasmid segregation oscillating ATPase ParF, at 104,750 to 105,412 _03595 H281DRAFT_03596: H281DRAFT_03596 - hypothetical protein, at 105,504 to 106,133 _03596 H281DRAFT_03597: H281DRAFT_03597 - arsenate reductase, at 106,536 to 106,919 _03597 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1 2 3at 104.738 kb on - strandat 105.523 kb on + strandat 105.671 kb on + strand, within H281DRAFT_03596at 105.671 kb on + strand, within H281DRAFT_03596at 105.671 kb on + strand, within H281DRAFT_03596at 105.671 kb on + strand, within H281DRAFT_03596at 105.672 kb on - strand, within H281DRAFT_03596at 105.672 kb on - strand, within H281DRAFT_03596at 105.672 kb on - strand, within H281DRAFT_03596at 105.730 kb on - strand, within H281DRAFT_03596at 105.836 kb on + strand, within H281DRAFT_03596at 105.837 kb on - strand, within H281DRAFT_03596at 105.837 kb on - strand, within H281DRAFT_03596at 105.837 kb on - strand, within H281DRAFT_03596at 105.888 kb on + strand, within H281DRAFT_03596at 106.000 kb on - strand, within H281DRAFT_03596at 106.027 kb on - strand, within H281DRAFT_03596at 106.027 kb on - strand, within H281DRAFT_03596at 106.125 kb on + strandat 106.160 kb on + strandat 106.161 kb on - strandat 106.161 kb on - strandat 106.235 kb on + strandat 106.236 kb on - strandat 106.279 kb on - strandat 106.346 kb on + strandat 106.347 kb on - strandat 106.347 kb on - strandat 106.347 kb on - strandat 106.520 kb on - strandat 106.549 kb on - strandat 106.596 kb on - strand, within H281DRAFT_03597at 106.605 kb on + strand, within H281DRAFT_03597at 106.605 kb on + strand, within H281DRAFT_03597at 106.605 kb on + strand, within H281DRAFT_03597at 106.606 kb on - strand, within H281DRAFT_03597at 106.606 kb on - strand, within H281DRAFT_03597at 106.768 kb on + strand, within H281DRAFT_03597at 106.783 kb on + strand, within H281DRAFT_03597at 106.931 kb on + strandat 106.931 kb on + strandat 106.932 kb on - strandat 106.932 kb on - strandat 106.938 kb on + strandat 106.981 kb on + strandat 106.983 kb on + strandat 106.983 kb on + strandat 106.983 kb on + strandat 106.984 kb on - strandat 106.984 kb on - strandat 107.030 kb on - strandat 107.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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104,738 - -1.5
105,523 + +0.5
105,671 + H281DRAFT_03596 0.27 -0.2
105,671 + H281DRAFT_03596 0.27 +0.1
105,671 + H281DRAFT_03596 0.27 -0.7
105,671 + H281DRAFT_03596 0.27 +0.2
105,672 - H281DRAFT_03596 0.27 -0.6
105,672 - H281DRAFT_03596 0.27 -0.6
105,672 - H281DRAFT_03596 0.27 -0.2
105,730 - H281DRAFT_03596 0.36 +0.1
105,836 + H281DRAFT_03596 0.53 -0.5
105,837 - H281DRAFT_03596 0.53 +0.6
105,837 - H281DRAFT_03596 0.53 +0.2
105,837 - H281DRAFT_03596 0.53 -0.8
105,888 + H281DRAFT_03596 0.61 -0.4
106,000 - H281DRAFT_03596 0.79 +3.0
106,027 - H281DRAFT_03596 0.83 -0.6
106,027 - H281DRAFT_03596 0.83 -0.2
106,125 + -0.2
106,160 + +1.5
106,161 - +1.4
106,161 - -1.3
106,235 + +0.1
106,236 - -0.2
106,279 - +0.3
106,346 + +0.1
106,347 - +0.2
106,347 - -0.5
106,347 - +1.3
106,520 - +0.0
106,549 - +0.2
106,596 - H281DRAFT_03597 0.16 -0.0
106,605 + H281DRAFT_03597 0.18 -0.6
106,605 + H281DRAFT_03597 0.18 -0.6
106,605 + H281DRAFT_03597 0.18 -0.0
106,606 - H281DRAFT_03597 0.18 +0.6
106,606 - H281DRAFT_03597 0.18 +0.4
106,768 + H281DRAFT_03597 0.60 -0.3
106,783 + H281DRAFT_03597 0.64 +0.3
106,931 + +0.0
106,931 + +2.4
106,932 - -0.7
106,932 - -0.1
106,938 + +0.8
106,981 + -0.1
106,983 + +1.4
106,983 + -1.0
106,983 + -1.9
106,984 - +0.4
106,984 - +0.1
107,030 - +3.5
107,100 - +0.5

Or see this region's nucleotide sequence