Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02620

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02619 and H281DRAFT_02620 are separated by 23 nucleotidesH281DRAFT_02620 and H281DRAFT_02621 are separated by 107 nucleotides H281DRAFT_02619: H281DRAFT_02619 - N-acyl-D-amino-acid deacylase, at 194,966 to 196,402 _02619 H281DRAFT_02620: H281DRAFT_02620 - Sugar phosphate permease, at 196,426 to 197,742 _02620 H281DRAFT_02621: H281DRAFT_02621 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 197,850 to 199,193 _02621 Position (kb) 196 197 198Strain fitness (log2 ratio) -1 0 1 2at 195.981 kb on - strand, within H281DRAFT_02619at 196.342 kb on + strandat 196.343 kb on - strandat 196.655 kb on - strand, within H281DRAFT_02620at 197.215 kb on - strand, within H281DRAFT_02620at 197.314 kb on + strand, within H281DRAFT_02620at 197.722 kb on + strandat 197.753 kb on - strandat 198.129 kb on + strand, within H281DRAFT_02621at 198.129 kb on + strand, within H281DRAFT_02621at 198.186 kb on + strand, within H281DRAFT_02621at 198.187 kb on - strand, within H281DRAFT_02621at 198.244 kb on - strand, within H281DRAFT_02621

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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195,981 - H281DRAFT_02619 0.71 +0.5
196,342 + -0.4
196,343 - +0.4
196,655 - H281DRAFT_02620 0.17 +0.4
197,215 - H281DRAFT_02620 0.60 +0.2
197,314 + H281DRAFT_02620 0.67 -1.5
197,722 + +0.5
197,753 - +2.0
198,129 + H281DRAFT_02621 0.21 +0.6
198,129 + H281DRAFT_02621 0.21 +0.3
198,186 + H281DRAFT_02621 0.25 -0.8
198,187 - H281DRAFT_02621 0.25 +0.5
198,244 - H281DRAFT_02621 0.29 +0.7

Or see this region's nucleotide sequence